View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_high_27 (Length: 267)
Name: NF11825_high_27
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 38751806 - 38751558
Alignment:
| Q |
1 |
ttcaacgtgaagtgtgctcacaaacacatacttacacttctcctcttcttgcagggtttcaagaaggttgttgctgataggtgggagtttgcaaatgatt |
100 |
Q |
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| T |
38751806 |
ttcaacgtgaagtgtgctcacaaacacatacttacacttctcctcttcttgcagggtttcaagaaggttgttgctgataggtgggagtttgcaaatgatt |
38751707 |
T |
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| Q |
101 |
acttcaaaaaaggagctaagcatttgttatgtgaaatccacaggagaaaaacccctcaacactatcaacaacaatactacgaacaatcgccacaaatttt |
200 |
Q |
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| T |
38751706 |
acttcaaaaaaggagctaagcatttgttatgtgaaatccacaggagaaaaacccctcaacactatcaacaacaatactacgaacaatcgccacaaatttt |
38751607 |
T |
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| Q |
201 |
tcaaccagatgaaaatatatgctggattgattctccattaccatctcct |
249 |
Q |
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| T |
38751606 |
tcaaccagatgaaagtatatgctggattgattctccattaccatctcct |
38751558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 33 - 249
Target Start/End: Original strand, 3020670 - 3020886
Alignment:
| Q |
33 |
tacacttctcctcttcttgcagggtttcaagaaggttgttgctgataggtgggagtttgcaaatgattacttcaaaaaaggagctaagcatttgttatgt |
132 |
Q |
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| T |
3020670 |
tacacttctcctcttcttgtagggtttcaagaaggttgttgctgataggtgggagtttgcaaatgaatacttcaaaaaaggagctaagcatctattatgt |
3020769 |
T |
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| Q |
133 |
gaaatccacaggagaaaaacccctcaacactatcaacaacaatactacgaacaatcgccacaaatttttcaaccagatgaaaatatatgctggattgatt |
232 |
Q |
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| T |
3020770 |
gaaatccacagaagaaaaactcctcaacactatcaacaacaatactatgaacaatcaccacaaatttttcaaccagatgaaagtatctgttggattgatt |
3020869 |
T |
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| Q |
233 |
ctccattaccatctcct |
249 |
Q |
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| T |
3020870 |
ctccattaccatctcct |
3020886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 46926615 - 46926545
Alignment:
| Q |
82 |
tgggagtttgcaaatgattacttcaaaaaaggagctaagcatttgttatgtgaaatccacaggagaaaaac |
152 |
Q |
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| T |
46926615 |
tgggagtttgcaaatgaatatttcaaaaaaggagaaaagcatttgctttgtgagattcatagaagaaaaac |
46926545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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