View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_high_28 (Length: 260)
Name: NF11825_high_28
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_high_28 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 15395740 - 15395980
Alignment:
| Q |
18 |
aggttaattcaaaatcgaaaacttgtgatgattgctttcagggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaattgca |
117 |
Q |
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| T |
15395740 |
aggttaattcaaaatcgaaaacttgtgatgattgctttcagggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaattgca |
15395839 |
T |
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| Q |
118 |
tttactctcgtggtgtttccttgccttcttttagcatattctggacaggctgcatatctggtgaataacttgcatcattcacaagatgtgttttaccgtt |
217 |
Q |
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| T |
15395840 |
tttactctcgtggtgtttccttgccttcttttagcatattctggacaggctgcatatctggtgaataacttgcatcattcacaagatgtgttttaccgtt |
15395939 |
T |
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| Q |
218 |
gtattccaggtttgttatatctgtcacactctacatcgaaatt |
260 |
Q |
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| T |
15395940 |
gtattccaggtttgttatatc--tcacactctacatcgaaatt |
15395980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 15387367 - 15387593
Alignment:
| Q |
19 |
ggttaattcaaaatcgaaaacttgtgatgattgctttcagggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaattgcat |
118 |
Q |
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| T |
15387367 |
ggttaattcaaaatcgaaaacttgtgatgattgctttcagggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaattgcat |
15387466 |
T |
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| Q |
119 |
ttactctcgtggtgtttccttgccttcttttagcatattctggacaggctgcatatctggtgaataacttgcatcattcacaagatgtgttttaccgttg |
218 |
Q |
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| T |
15387467 |
ttactctcgtggtgtttccttgccttcttttagcatattctggacaggctgcatatctggtgaataacttgcatcattcacaagatgtgttttaccgttc |
15387566 |
T |
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| Q |
219 |
tattccaggtttgttatatctgtcaca |
245 |
Q |
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| T |
15387567 |
tattccaggtttgttatatctgtcaca |
15387593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 229
Target Start/End: Complemental strand, 38667321 - 38667149
Alignment:
| Q |
57 |
agggacagaagctctttttgccgacttagccaattttccagtgtcatctgtacaaattgcatttactctcgtggtgtttccttgccttcttttagcatat |
156 |
Q |
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| T |
38667321 |
agggacggaggctcttttcgccgacctatctcattttccggtctcagctgtacagcttgcatttactctggttgtgtttccctgccttcttttagcctat |
38667222 |
T |
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| Q |
157 |
tctggacaggctgcatatctggtgaataacttgcatcattcacaagatgtgttttaccgttgtattccaggtt |
229 |
Q |
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| T |
38667221 |
tctggacaagctgcataccttatgaataacttgactcattcaaaagatgctttttatcgttctattccaggtt |
38667149 |
T |
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