View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_high_29 (Length: 254)
Name: NF11825_high_29
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 50250449 - 50250212
Alignment:
| Q |
5 |
tggttattttcagaatggtacaactgaaatatgggtgatgaaagaatcttgttggactaagacacttgttcttcctcctggttacttttaccctatatac |
104 |
Q |
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| T |
50250449 |
tggtgattttcagaatggtacaactgaaatatgggtgatgaaagaatcttgttggactaagacacttgttcttcctcctggttacttttaccctatatac |
50250350 |
T |
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| Q |
105 |
actacaaaaaataatgatatcattggaaaaaatggttttcattcattggtcaaatacaatgaccaaggacagcagttcgggtttcatggaaactgggacg |
204 |
Q |
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| T |
50250349 |
actacaaaaaataatgatatcattggaaaaaatggttttcattcattggtcaaatacaatgaccaaggacagcagttcgggtttcatggcaactgggacg |
50250250 |
T |
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| Q |
205 |
ggccataccaagcggtcatgtataaagagtctctgctt |
242 |
Q |
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| T |
50250249 |
ggccataccaagcggtcatgtatatagagtctttgctt |
50250212 |
T |
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Back To:
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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 21979288 - 21979212
Alignment:
| Q |
56 |
ttggactaagacacttgttcttcctcctggttacttttaccctatatacactacaaaaaataatgatatcattggaa |
132 |
Q |
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||||| ||||| |||||||||||||| | || || ||| |||| ||||| ||||||||||| ||||||||||||||| |
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| T |
21979288 |
ttggaataagaaacttgttcttcctcgttgtgacattttccctgtatactctacaaaaaattatgatatcattggaa |
21979212 |
T |
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