View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_high_36 (Length: 241)
Name: NF11825_high_36
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 18100886 - 18100664
Alignment:
| Q |
1 |
caccaaatgctagttgtgatgccatattatgcttctgtggaatcaggcttcatcaaataagctcgttaaattgtccaaacgcttttaatgtttctgtttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18100886 |
caccaaatgctagttgtgatgccatattatgcttctgtggaatcaggcttcatcaaataagctcgttaaattgtccaaacgcttttaatgtttctgtttc |
18100787 |
T |
|
| Q |
101 |
tactatggtgcacaatgtatctggtactcataaagctactcctactgctgctgttcgtgacttggagaagaattgtcgtaactcttcttatgctggttgc |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18100786 |
tactatggtgcacaatgtatctggttctcataaagctacccctactgctgctgttcgtgacttggagaagaattgtcgtaactcttcttatgctggttgc |
18100687 |
T |
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| Q |
201 |
accaattgtcttagtgcattaca |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
18100686 |
accaattgtcttagtgcattaca |
18100664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37858494 - 37858272
Alignment:
| Q |
1 |
caccaaatgctagttgtgatgccatattatgcttctgtggaatcaggcttcatcaaataagctcgttaaattgtccaaacgcttttaatgtttctgtttc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858494 |
caccaaatgctagttgtgatgccatattatgcttctgtggaatcaggcttcatcaaataagctcgttaaattgtccaaacgcttttaatgtttctgtttc |
37858395 |
T |
|
| Q |
101 |
tactatggtgcacaatgtatctggtactcataaagctactcctactgctgctgttcgtgacttggagaagaattgtcgtaactcttcttatgctggttgc |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858394 |
tactatggtgcacaatgtatctggttctcataaagctacccctactgctgctgttcgtgacttggagaagaattgtcgtaactcttcttatgctggttgc |
37858295 |
T |
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| Q |
201 |
accaattgtcttagtgcattaca |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
37858294 |
accaattgtcttagtgcattaca |
37858272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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