View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_high_38 (Length: 238)
Name: NF11825_high_38
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38342038 - 38342260
Alignment:
| Q |
1 |
ttagttagtactatatatcatagtttacacgtaaaagtaacaatattggtgatatgcattgcaatattaatgggataagttatatagtttatataggtta |
100 |
Q |
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| T |
38342038 |
ttagttagtactatatatcatagtttacacgtaaaagtaacaatattggtgatatgcattgcaatattaatgggataagttatatagtttatataggtta |
38342137 |
T |
|
| Q |
101 |
aaacactctctaatatcctggatcttctgaaattctgttaatcctatac--atatataaacttaaaccacgctattcacatcacataacaaaactgaaat |
198 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38342138 |
aaacactctctaatatcctggatcttctgaaattcagttaatcctatacatatatataaacttaaaccgcgctattcacatcacataacaaaactgaaat |
38342237 |
T |
|
| Q |
199 |
agtatctcatcagttttaagggt |
221 |
Q |
| |
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||| ||||||||||||||||||| |
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| T |
38342238 |
agtctctcatcagttttaagggt |
38342260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38446231 - 38446453
Alignment:
| Q |
1 |
ttagttagtactatatatcatagtttacacgtaaaagtaacaatattggtgatatgcattgcaatattaatgggataagttatatagtttatataggtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38446231 |
ttagttagtactatatatcatagtttacacgtaaaagtaacaatattggtgatatgcattgcaatattaatgggataagttatatagtttatataggtta |
38446330 |
T |
|
| Q |
101 |
aaacactctctaatatcctggatcttctgaaattctgttaatcctatac--atatataaacttaaaccacgctattcacatcacataacaaaactgaaat |
198 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38446331 |
aaacactctctaatatcctggatcttctgaaattcagttaatcctatacatatatataaacttaaaccgcgctattcacatcacataacaaaactgaaat |
38446430 |
T |
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| Q |
199 |
agtatctcatcagttttaagggt |
221 |
Q |
| |
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||| ||||||||||||||||||| |
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| T |
38446431 |
agtctctcatcagttttaagggt |
38446453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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