View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11825_high_4 (Length: 695)

Name: NF11825_high_4
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11825_high_4
NF11825_high_4
[»] chr2 (22 HSPs)
chr2 (35-684)||(34176138-34176786)
chr2 (35-430)||(34144017-34144412)
chr2 (35-304)||(34114923-34115192)
chr2 (606-687)||(9050115-9050196)
chr2 (606-687)||(16576252-16576333)
chr2 (492-599)||(2248953-2249061)
chr2 (606-670)||(35370402-35370466)
chr2 (508-595)||(16576215-16576302)
chr2 (529-600)||(16863445-16863515)
chr2 (606-684)||(16863460-16863538)
chr2 (528-595)||(38576958-38577025)
chr2 (606-684)||(13712743-13712821)
chr2 (492-587)||(13712948-13713045)
chr2 (552-600)||(13712766-13712814)
chr2 (612-684)||(38576930-38577002)
chr2 (637-684)||(1027407-1027454)
chr2 (609-684)||(13712912-13712987)
chr2 (389-430)||(34115268-34115309)
chr2 (42-122)||(2766169-2766249)
chr2 (606-670)||(16576421-16576485)
chr2 (607-682)||(34176882-34176955)
chr2 (608-684)||(35371117-35371193)
[»] chr7 (10 HSPs)
chr7 (467-593)||(43208671-43208798)
chr7 (606-684)||(23944080-23944158)
chr7 (468-569)||(32988565-32988667)
chr7 (606-683)||(32138880-32138957)
chr7 (622-677)||(34891385-34891440)
chr7 (606-677)||(34891537-34891608)
chr7 (508-585)||(27651540-27651616)
chr7 (551-595)||(7463858-7463902)
chr7 (606-654)||(29152350-29152398)
chr7 (551-595)||(32138907-32138951)
[»] chr5 (15 HSPs)
chr5 (606-683)||(2243310-2243387)
chr5 (528-681)||(972816-972963)
chr5 (606-683)||(14138549-14138626)
chr5 (616-677)||(39808232-39808293)
chr5 (606-687)||(973115-973196)
chr5 (612-684)||(7982373-7982445)
chr5 (602-682)||(22780339-22780419)
chr5 (548-587)||(14138552-14138591)
chr5 (544-595)||(41264532-41264583)
chr5 (609-668)||(41264536-41264595)
chr5 (620-670)||(39730313-39730363)
chr5 (637-687)||(40483716-40483766)
chr5 (548-593)||(2243339-2243384)
chr5 (643-684)||(17739907-17739948)
chr5 (527-599)||(17736916-17736987)
[»] chr1 (13 HSPs)
chr1 (606-683)||(68101-68178)
chr1 (606-683)||(52432665-52432742)
chr1 (606-683)||(10775167-10775244)
chr1 (606-662)||(46080975-46081031)
chr1 (608-680)||(3231964-3232036)
chr1 (551-595)||(10775173-10775217)
chr1 (528-595)||(2534437-2534504)
chr1 (548-587)||(24873772-24873811)
chr1 (548-587)||(24874605-24874644)
chr1 (618-684)||(2534409-2534475)
chr1 (534-595)||(52432654-52432715)
chr1 (529-593)||(3231946-3232010)
chr1 (528-599)||(38839678-38839747)
[»] chr8 (11 HSPs)
chr8 (612-687)||(6630529-6630604)
chr8 (529-599)||(7590332-7590402)
chr8 (606-684)||(32166628-32166706)
chr8 (607-684)||(12736059-12736136)
chr8 (66-121)||(23630668-23630723)
chr8 (606-683)||(35574634-35574711)
chr8 (529-592)||(34695817-34695880)
chr8 (510-599)||(31475009-31475096)
chr8 (616-677)||(37010345-37010406)
chr8 (643-684)||(40700887-40700928)
chr8 (529-569)||(39280941-39280981)
[»] chr6 (3 HSPs)
chr6 (609-675)||(32047181-32047247)
chr6 (615-675)||(23577164-23577224)
chr6 (606-670)||(32342604-32342668)
[»] chr4 (7 HSPs)
chr4 (606-687)||(22050856-22050937)
chr4 (606-677)||(15131575-15131646)
chr4 (528-599)||(20512844-20512915)
chr4 (548-599)||(25062497-25062548)
chr4 (623-684)||(25062340-25062401)
chr4 (622-670)||(20512834-20512882)
chr4 (637-677)||(22050732-22050772)
[»] chr3 (8 HSPs)
chr3 (606-670)||(39341203-39341267)
chr3 (606-669)||(54437810-54437873)
chr3 (608-684)||(20519289-20519365)
chr3 (555-595)||(39341213-39341253)
chr3 (618-684)||(54437653-54437719)
chr3 (606-687)||(48646416-48646496)
chr3 (548-597)||(54437813-54437862)
chr3 (607-675)||(42091793-42091861)
[»] scaffold0564 (1 HSPs)
scaffold0564 (466-599)||(5452-5586)
[»] scaffold0047 (1 HSPs)
scaffold0047 (606-675)||(62729-62798)
[»] scaffold1743 (1 HSPs)
scaffold1743 (528-595)||(771-837)


Alignment Details
Target: chr2 (Bit Score: 569; Significance: 0; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 35 - 684
Target Start/End: Original strand, 34176138 - 34176786
Alignment:
Q  35 taaacatggactcaacctaaacatgagaatgcaaaactccattggatttaaagcaccatctccatccaaatcaccttccattagcatgtacacgagctca 134  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34176138 taaacatggactcaacctaaacataagaatgcaaaactccattggatttaaagcaccatctccatccaaatcaccttccattagcatgtacacgagctca 34176237  T
Q  135 tcatccttcacctccataccaagcatgaaacaattcatcttcaaactctcgaatgttataagacccttgttgacatccataagcaaatgaaacccgtagc 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34176238 tcatccttcacctccataccaagcatgaaacaattcatcttcaaactctcaaatgttataagacccttgttgacatccataagcaaatgaaacccgtagc 34176337  T
Q  235 aaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatccaagtcaaaatccaactccatgtggaaacttgt 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34176338 aaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatccaagtcaaaatccaactccatgtggaaacttgt 34176437  T
Q  335 gagtgaaacttcaagtagaagttgctaggaacaatgtgaaagcggatcaattattagcttgtgctagaagggtgttgtaagttgtgctttttatatnnnn 434  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||        
T  34176438 gagtgaaacttcaagtagaagttgctaggaacaatgtgaaaggggattaattattagcttgtgctagaagggtgttgtaagttgtgctttttatat-aaa 34176536  T
Q  435 nnnnttgtgttttctaaattgtgtgaaactaagttttttctacattatcccttgaataattgagggtaatataccctatcagagaacaattatattttct 534  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34176537 aaaattgtgttttctaaattgtgtgaaactaagttttttctacattatcccttgaataattgagggtaatataccctattagagaacaattatattttct 34176636  T
Q  535 tcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctttgttactcttacaatcagttaccattttcatctta 634  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||| ||| ||| ||||    
T  34176637 tcatctttatttctacaatcagttaccattttcatcttaagaatatcaaacttcttcatcttcttcattactcttacaatcagttactattatcacctta 34176736  T
Q  635 ggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  34176737 ggaacatcaaaattcttcatctccttcatttaacatatgatcttcatctc 34176786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 35 - 430
Target Start/End: Original strand, 34144017 - 34144412
Alignment:
Q  35 taaacatggactcaacctaaacatgagaatgcaaaactccattggatttaaagcaccatctccatccaaatcaccttccattagcatgtacacgagctca 134  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34144017 taaacatggactcaacctaaacatgagaatgcaaaactccatttgatttaaagcaccatctccatccaaatcaccttccattagcatgtacacgagctct 34144116  T
Q  135 tcatccttcacctccataccaagcatgaaacaattcatcttcaaactctcgaatgttataagacccttgttgacatccataagcaaatgaaacccgtagc 234  Q
    || ||| |||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |     
T  34144117 tcgtccctcacctccaagccaagcatgaaacaattcatcttcaaactctcaaatgttataagacccttgttggcatccataagcaaatgaaacccgttgt 34144216  T
Q  235 aaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatccaagtcaaaatccaactccatgtggaaacttgt 334  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| || |||||||| |||  |||    
T  34144217 aaagttcacctataaaaccttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatccatgtaaaaatctaaatccatgtgaaaaggtgt 34144316  T
Q  335 gagtgaaacttcaagtagaagttgctaggaacaatgtgaaagcggatcaattattagcttgtgctagaagggtgttgtaagttgtgctttttatat 430  Q
    ||||||||||| ||||||| |||||||| ||||||| |||||  ||| |||||||||||||||||||||||||||  |||||||||||||||||||    
T  34144317 gagtgaaactttaagtagaggttgctagtaacaatgcgaaaggagattaattattagcttgtgctagaagggtgtgttaagttgtgctttttatat 34144412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 35 - 304
Target Start/End: Original strand, 34114923 - 34115192
Alignment:
Q  35 taaacatggactcaacctaaacatgagaatgcaaaactccattggatttaaagcaccatctccatccaaatcaccttccattagcatgtacacgagctca 134  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||     
T  34114923 taaacatggactcaacctaaacatgagaatgcaaaactccatttgatttaaagcaccatctccatccaaatcaccctccattagcatgtacacgagttct 34115022  T
Q  135 tcatccttcacctccataccaagcatgaaacaattcatcttcaaactctcgaatgttataagacccttgttgacatccataagcaaatgaaacccgtagc 234  Q
    |||||| |||||||||  |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||| |||| || | ||    
T  34115023 tcatccctcacctccaagccaagcatgaaacaattcatcttcaagctctcaaatgttataagacctttgttcacatccataagcaaacgaaatccattgc 34115122  T
Q  235 aaagttcacctataaatgcttctgctcctaaactcgcaaccatggatggaaagtagtcctcaaaatccaa 304  Q
    ||||||||||||||||  |||||||||||||||  | || ||||||||||||||||||||||||||||||    
T  34115123 aaagttcacctataaacccttctgctcctaaacgtgaaatcatggatggaaagtagtcctcaaaatccaa 34115192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 606 - 687
Target Start/End: Complemental strand, 9050196 - 9050115
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctcatt 687  Q
    |||||| |||||||||||||||||| | | ||||| ||||||||||||||||| ||||| |||||||||||| |||||||||    
T  9050196 tcttacgatcagttaccattttcatatgaagaacaacaaacttcttcatctccatcattcaacatatgatctccatctcatt 9050115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 606 - 687
Target Start/End: Original strand, 16576252 - 16576333
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctcatt 687  Q
    ||||||||||| ||||||||||| ||| | ||||| ||||||||||||||||||||||| ||||| |||||| | |||||||    
T  16576252 tcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctcatt 16576333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 492 - 599
Target Start/End: Complemental strand, 2249061 - 2248953
Alignment:
Q  492 aattgagggtaatatacc-ctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttctt 590  Q
    |||||||| |||| |||| |||||| |||| ||| ||||||||||||||||||||  || ||| ||||||||||||||| | || || || |||||||||    
T  2249061 aattgaggataatttacctctatcaaagaaaaatcatattttcttcatctttattcttagaattagttaccattttcatctcaaaaacattaaacttctt 2248962  T
Q  591 catcttctt 599  Q
    |||||||||    
T  2248961 catcttctt 2248953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 606 - 670
Target Start/End: Original strand, 35370402 - 35370466
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 670  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||| ||||||||||| |||||    
T  35370402 tcttacaatcagttaccattttaatctcaagaataccaaacttcttcgtctccttcattcaacat 35370466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 508 - 595
Target Start/End: Original strand, 16576215 - 16576302
Alignment:
Q  508 ccctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 595  Q
    |||||||| |||| |||||| ||||||||| |||| ||  |||||||| ||||||||||| | | ||||| |||||||||||||||||    
T  16576215 ccctatcaaagaaaaattatcttttcttcaccttttttcttacaatcaattaccattttcctctcaagaacatcaaacttcttcatct 16576302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 529 - 600
Target Start/End: Original strand, 16863445 - 16863515
Alignment:
Q  529 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttcttt 600  Q
    |||||||| ||||||||  |||||||||||||||||||||| | ||||| |||||| |||||||||||||||    
T  16863445 ttttcttc-tctttattcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttcttt 16863515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 16863460 - 16863538
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    ||||||||||||||||||||||||||| | ||||| |||| |||||||||| ||| ||| || || |||||| ||||||    
T  16863460 tcttacaatcagttaccattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctc 16863538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 528 - 595
Target Start/End: Complemental strand, 38577025 - 38576958
Alignment:
Q  528 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 595  Q
    ||||||||||| ||||||| || ||||||||||||||||||| | ||||| || ||| ||||||||||    
T  38577025 attttcttcatatttatttttataatcagttaccattttcatctaaagaacattaaagttcttcatct 38576958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 684
Target Start/End: Complemental strand, 13712821 - 13712743
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    |||||| |||||||||||||| ||||||| ||||| |||||||||| |||| ||| ||| ||||| | |||| ||||||    
T  13712821 tcttactatcagttaccatttccatcttaagaacatcaaacttctttatcttctttattcaacatctaatctccatctc 13712743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 492 - 587
Target Start/End: Complemental strand, 13713045 - 13712948
Alignment:
Q  492 aattgagggtaatataccctatcagagaacaat--tatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaactt 587  Q
    |||||||| |||| |||||||||| |||| |||  |||||||| || || |||||| |||||||| ||||||||||| || |||| ||| ||||||||    
T  13713045 aattgaggataatttaccctatcaaagaaaaatcatatattttttttatatttattcctacaatcggttaccatttttatcttaaaaatttcaaactt 13712948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 600
Target Start/End: Complemental strand, 13712814 - 13712766
Alignment:
Q  552 atcagttaccattttcattttaagaatatcaaacttcttcatcttcttt 600  Q
    |||||||||||||| ||| ||||||| |||||||||||| |||||||||    
T  13712814 atcagttaccatttccatcttaagaacatcaaacttctttatcttcttt 13712766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 612 - 684
Target Start/End: Complemental strand, 38577002 - 38576930
Alignment:
Q  612 aatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    ||||||||||||||||||||| | |||||  ||| ||||||||||| |||||| ||||| |||| | ||||||    
T  38577002 aatcagttaccattttcatctaaagaacattaaagttcttcatctctttcattcaacatgtgatttccatctc 38576930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 684
Target Start/End: Complemental strand, 1027454 - 1027407
Alignment:
Q  637 aacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    |||| |||||||||| ||||  ||||||||||||||||||||||||||    
T  1027454 aacatcaaacttctttatcttattcatttaacatatgatcttcatctc 1027407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 609 - 684
Target Start/End: Complemental strand, 13712987 - 13712912
Alignment:
Q  609 tacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    ||||||| ||||||||||| ||||||  ||   ||||||| || |||||||||||||||||| |||||| ||||||    
T  13712987 tacaatcggttaccatttttatcttaaaaatttcaaacttttttatctccttcatttaacatgtgatctacatctc 13712912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 34115268 - 34115309
Alignment:
Q  389 tagcttgtgctagaagggtgttgtaagttgtgctttttatat 430  Q
    |||||||||||||||||||||  |||||||||||| ||||||    
T  34115268 tagcttgtgctagaagggtgtgttaagttgtgcttcttatat 34115309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 2766249 - 2766169
Alignment:
Q  42 ggactcaacctaaacatgagaatgcaaaactccattggatttaaagcaccatctccatccaaatcaccttccattagcatg 122  Q
    ||||||||||||||||||||  |||||||||||||   ||| | ||| ||||| ||||| | |||||||||  ||||||||    
T  2766249 ggactcaacctaaacatgagggtgcaaaactccatctcattaagagctccatccccatcaatatcaccttctcttagcatg 2766169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 606 - 670
Target Start/End: Original strand, 16576421 - 16576485
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 670  Q
    ||||||||||| ||| ||||||||| | |  |||| ||||| ||||||| |||||||||||||||    
T  16576421 tcttacaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacat 16576485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 607 - 682
Target Start/End: Original strand, 34176882 - 34176955
Alignment:
Q  607 cttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatc 682  Q
    |||||||| ||||||||||||||||| | ||  ||||||||| | ||||| ||||||| ||||| |||| ||||||    
T  34176882 cttacaattagttaccattttcatctcaaga--accaaacttgtacatcttcttcattcaacatgtgatattcatc 34176955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 608 - 684
Target Start/End: Original strand, 35371117 - 35371193
Alignment:
Q  608 ttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    ||||||||| ||||||||||||| | | ||||| ||||||||||  |  |||||||||||||| |||| | ||||||    
T  35371117 ttacaatcatttaccattttcatatcaagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctc 35371193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 467 - 593
Target Start/End: Original strand, 43208671 - 43208798
Alignment:
Q  467 gttttttctacattatcccttgaataattgagggtaatata-ccctatcagagaacaa-ttatattttcttcatctttatttctacaatcagttaccatt 564  Q
    |||||||||||||||||||||||  ||||||||||||| || |||||||  | || || |||| |||||||||||||||||  |||||||| ||||||||    
T  43208671 gttttttctacattatcccttgatgaattgagggtaatttatccctatcgaataaaaagttat-ttttcttcatctttattcttacaatcaattaccatt 43208769  T
Q  565 ttcattttaagaatatcaaacttcttcat 593  Q
    || ||||||||||||||||| | ||||||    
T  43208770 tttattttaagaatatcaaattccttcat 43208798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 606 - 684
Target Start/End: Original strand, 23944080 - 23944158
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    ||||||||| |||| |||||||||||||| ||||| ||||||||||| |||| |||||| ||||| |||| | ||||||    
T  23944080 tcttacaattagttgccattttcatcttaagaacatcaaacttcttcttctctttcattcaacatgtgatttccatctc 23944158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 569
Target Start/End: Complemental strand, 32988667 - 32988565
Alignment:
Q  468 ttttttctacattatcccttgaataattgagggtaatataccc-tatcagagaacaattatattttcttcatctttatttctacaatcagttaccatttt 566  Q
    |||||| |||||||||||| ||  ||||| ||||||| ||| | ||||| |||| ||| ||||||||||||||||||||  ||||||||| || ||||||    
T  32988667 ttttttatacattatccctcgatgaattgggggtaatttacacatatcaaagaaaaatcatattttcttcatctttattcttacaatcagctatcatttt 32988568  T
Q  567 cat 569  Q
    |||    
T  32988567 cat 32988565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 606 - 683
Target Start/End: Complemental strand, 32138957 - 32138880
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 683  Q
    ||||| ||||| ||||||||||||||||| ||||| |||| ||||||||||||||| || ||||| | |||| |||||    
T  32138957 tcttaaaatcaattaccattttcatcttaagaacatcaaaattcttcatctccttcgttcaacatgtaatctccatct 32138880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 622 - 677
Target Start/End: Original strand, 34891385 - 34891440
Alignment:
Q  622 cattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 677  Q
    ||||||||| ||| ||||| |||||||||| |||| ||||||||||||| ||||||    
T  34891385 cattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgatct 34891440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 677
Target Start/End: Original strand, 34891537 - 34891608
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 677  Q
    |||||| || ||||| |||||| |||| | ||||| |||| |||||||||||||||||| ||||| ||||||    
T  34891537 tcttactattagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatct 34891608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 585
Target Start/End: Complemental strand, 27651616 - 27651540
Alignment:
Q  508 ccctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaac 585  Q
    |||||||| |||| ||||   |||||||||||||||||| |||||| ||| ||||||||||| | ||||| |||||||    
T  27651616 ccctatcaaagaaaaattcatttttcttcatctttatttttacaat-agtaaccattttcatctcaagaacatcaaac 27651540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 551 - 595
Target Start/End: Original strand, 7463858 - 7463902
Alignment:
Q  551 aatcagttaccattttcattttaagaatatcaaacttcttcatct 595  Q
    |||| |||| ||||||||||| ||||| |||||||||||||||||    
T  7463858 aatcggttatcattttcatttgaagaacatcaaacttcttcatct 7463902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 606 - 654
Target Start/End: Complemental strand, 29152398 - 29152350
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcat 654  Q
    |||||||||||||||| |||||||||| |  |||| |||||||||||||    
T  29152398 tcttacaatcagttactattttcatctcaataacatcaaacttcttcat 29152350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 551 - 595
Target Start/End: Complemental strand, 32138951 - 32138907
Alignment:
Q  551 aatcagttaccattttcattttaagaatatcaaacttcttcatct 595  Q
    ||||| ||||||||||||| ||||||| |||||| ||||||||||    
T  32138951 aatcaattaccattttcatcttaagaacatcaaaattcttcatct 32138907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 606 - 683
Target Start/End: Complemental strand, 2243387 - 2243310
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 683  Q
    ||||||||| ||||||||||||||||| | ||||| ||||||||||||| ||||||||| ||||| |||||| |||||    
T  2243387 tcttacaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatct 2243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 528 - 681
Target Start/End: Original strand, 972816 - 972963
Alignment:
Q  528 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctttgttactcttacaatcagttaccatttt 627  Q
    ||||| ||| ||||||||| || ||| ||||| ||||||||| | ||||| |||||||||||||||||      ||| | ||  |||||||| |||||||    
T  972816 atttttttcctctttatttttaaaattagttatcattttcatctcaagaacatcaaacttcttcatct------ttatttttgaaatcagttgccatttt 972909  T
Q  628 catcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcat 681  Q
    ||||  | ||| | |||| ||||||||||| |||||||||||| | ||||||||    
T  972910 catcacaagaaaatcaaatttcttcatctctttcatttaacatgttatcttcat 972963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 606 - 683
Target Start/End: Original strand, 14138549 - 14138626
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 683  Q
    ||||||||||| ||||||||||||||||| ||| | |||||||  ||||||| |||||| ||||| | ||||||||||    
T  14138549 tcttacaatcaattaccattttcatcttaagaatatcaaactttctcatctctttcattcaacatgtaatcttcatct 14138626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 616 - 677
Target Start/End: Complemental strand, 39808293 - 39808232
Alignment:
Q  616 agttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 677  Q
    ||||| |||||||| |||| || || ||||||| ||||||||||||||||||||||||||||    
T  39808293 agttatcattttcaccttaagaccatcaaactttttcatctccttcatttaacatatgatct 39808232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 606 - 687
Target Start/End: Original strand, 973115 - 973196
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctcatt 687  Q
    ||||||||| ||||| |||||| |||| |  ||||  ||| |||||||||||||| ||| ||||| ||||||||||||||||    
T  973115 tcttacaattagttatcatttttatctcaaaaacattaaatttcttcatctcctttattcaacatgtgatcttcatctcatt 973196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 612 - 684
Target Start/End: Complemental strand, 7982445 - 7982373
Alignment:
Q  612 aatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    ||||||||||||||||||||||  ||||| |||| ||||||  ||| ||| |||||||| |||| ||||||||    
T  7982445 aatcagttaccattttcatcttgagaacatcaaatttcttcgactctttcttttaacatgtgatattcatctc 7982373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 682
Target Start/End: Complemental strand, 22780419 - 22780339
Alignment:
Q  602 ttactcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatc 682  Q
    ||||| || |||| ||| ||||||||||||| |  ||||  |||||||||||| ||||||||| ||||| |||||||||||    
T  22780419 ttactatttcaatgagtcaccattttcatctcaaaaacaataaacttcttcatatccttcattcaacatgtgatcttcatc 22780339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 587
Target Start/End: Original strand, 14138552 - 14138591
Alignment:
Q  548 tacaatcagttaccattttcattttaagaatatcaaactt 587  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  14138552 tacaatcaattaccattttcatcttaagaatatcaaactt 14138591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 595
Target Start/End: Original strand, 41264532 - 41264583
Alignment:
Q  544 tttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 595  Q
    ||||||||||||||||| |||||||| | ||||| |||||| ||||||||||    
T  41264532 tttctacaatcagttacaattttcatatcaagaacatcaaatttcttcatct 41264583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 609 - 668
Target Start/End: Original strand, 41264536 - 41264595
Alignment:
Q  609 tacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaac 668  Q
    ||||||||||||| |||||||| | | ||||| |||| ||||||||||| ||||||||||    
T  41264536 tacaatcagttacaattttcatatcaagaacatcaaatttcttcatctctttcatttaac 41264595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 670
Target Start/End: Complemental strand, 39730363 - 39730313
Alignment:
Q  620 accattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 670  Q
    ||||||||||||| | ||||| ||||||| |||||||| ||||||||||||    
T  39730363 accattttcatctcaagaacatcaaactttttcatctctttcatttaacat 39730313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 687
Target Start/End: Original strand, 40483716 - 40483766
Alignment:
Q  637 aacaccaaacttcttcatctccttcatttaacatatgatcttcatctcatt 687  Q
    |||| ||||||||||||||||  ||||| ||||| ||||||||||||||||    
T  40483716 aacatcaaacttcttcatctcactcattcaacatgtgatcttcatctcatt 40483766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 593
Target Start/End: Complemental strand, 2243384 - 2243339
Alignment:
Q  548 tacaatcagttaccattttcattttaagaatatcaaacttcttcat 593  Q
    |||||| ||||||||||||||| | ||||| |||||||||||||||    
T  2243384 tacaattagttaccattttcatctcaagaacatcaaacttcttcat 2243339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 643 - 684
Target Start/End: Original strand, 17739907 - 17739948
Alignment:
Q  643 aaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    |||||||||||||| ||||||||||||| |||| ||||||||    
T  17739907 aaacttcttcatcttcttcatttaacatgtgattttcatctc 17739948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 527 - 599
Target Start/End: Complemental strand, 17736987 - 17736916
Alignment:
Q  527 tattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 599  Q
    |||||| ||||||||||| | |||||||  |||||||||| || |||||||||||||| ||||| | ||||||    
T  17736987 tatttttttcatctttatct-tacaatcgattaccatttttatcttaagaatatcaaatttctttaccttctt 17736916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 606 - 683
Target Start/End: Original strand, 68101 - 68178
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 683  Q
    ||||||||| |||||||||||| || | | ||||| | ||||||||||||||||||||||||||| |||||| |||||    
T  68101 tcttacaatgagttaccatttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatct 68178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 606 - 683
Target Start/End: Original strand, 52432665 - 52432742
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 683  Q
    ||||| ||||| ||||||||||||||| | |||||  |||||||||||||||||||||||||||  |||||| |||||    
T  52432665 tcttataatcaattaccattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatct 52432742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 606 - 683
Target Start/End: Original strand, 10775167 - 10775244
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 683  Q
    ||||| ||||| ||||||||||||||||| ||||| |||||||||||||||| ||| || ||||| | || |||||||    
T  10775167 tcttagaatcaattaccattttcatcttaagaacatcaaacttcttcatctctttcgttcaacatctaattttcatct 10775244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 606 - 662
Target Start/End: Original strand, 46080975 - 46081031
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttca 662  Q
    ||||||||||| ||||||||||||||| | |||||  ||||||||||||||||||||    
T  46080975 tcttacaatcaattaccattttcatctcaagaacattaaacttcttcatctccttca 46081031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 680
Target Start/End: Original strand, 3231964 - 3232036
Alignment:
Q  608 ttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttca 680  Q
    |||||||||||| | |||||||||| | ||||| ||||||||||||| || |||||| ||||| |||| ||||    
T  3231964 ttacaatcagttgctattttcatctcaagaacaacaaacttcttcatgtcattcattcaacatgtgatattca 3232036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 595
Target Start/End: Original strand, 10775173 - 10775217
Alignment:
Q  551 aatcagttaccattttcattttaagaatatcaaacttcttcatct 595  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||    
T  10775173 aatcaattaccattttcatcttaagaacatcaaacttcttcatct 10775217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 595
Target Start/End: Complemental strand, 2534504 - 2534437
Alignment:
Q  528 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 595  Q
    ||||||||||||||||||| || ||| | |||||| |||||| | || || |||||||||||||||||    
T  2534504 attttcttcatctttatttttaaaataatttaccactttcatctcaaaaacatcaaacttcttcatct 2534437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 587
Target Start/End: Original strand, 24873772 - 24873811
Alignment:
Q  548 tacaatcagttaccattttcattttaagaatatcaaactt 587  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  24873772 tacaatcaattaccattttcattttaagaagatcaaactt 24873811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 587
Target Start/End: Original strand, 24874605 - 24874644
Alignment:
Q  548 tacaatcagttaccattttcattttaagaatatcaaactt 587  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  24874605 tacaatcaattaccattttcattttaagaagatcaaactt 24874644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 684
Target Start/End: Complemental strand, 2534475 - 2534409
Alignment:
Q  618 ttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    |||||| |||||||| |  |||| ||||||||||||||||||| ||||  |||| ||||||||||||    
T  2534475 ttaccactttcatctcaaaaacatcaaacttcttcatctccttaatttcgcataagatcttcatctc 2534409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 595
Target Start/End: Original strand, 52432654 - 52432715
Alignment:
Q  534 ttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 595  Q
    ||||||||||||  || ||||| ||||||||||||| | ||||| || ||||||||||||||    
T  52432654 ttcatctttattcttataatcaattaccattttcatctcaagaacattaaacttcttcatct 52432715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 529 - 593
Target Start/End: Original strand, 3231946 - 3232010
Alignment:
Q  529 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcat 593  Q
    |||||||||| ||||| | ||||||||||| | |||||||| | ||||| | |||||||||||||    
T  3231946 ttttcttcatgtttatctttacaatcagttgctattttcatctcaagaacaacaaacttcttcat 3232010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 528 - 599
Target Start/End: Complemental strand, 38839747 - 38839678
Alignment:
Q  528 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 599  Q
    ||||| ||||||||||||  |||||| |||||  |||||||| | ||||| ||||||| |||||||||||||    
T  38839747 atttttttcatctttattcttacaattagtta--attttcatctcaagaacatcaaacctcttcatcttctt 38839678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 612 - 687
Target Start/End: Complemental strand, 6630604 - 6630529
Alignment:
Q  612 aatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctcatt 687  Q
    ||||| ||||||||||||||||| || ||  ||| |||||||||||||||||||||||  |||||| |||||||||    
T  6630604 aatcaattaccattttcatcttaagatcattaaatttcttcatctccttcatttaacaagtgatctccatctcatt 6630529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 529 - 599
Target Start/End: Complemental strand, 7590402 - 7590332
Alignment:
Q  529 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 599  Q
    |||||||| ||||||||  ||||||| ||||||| |||||||| ||||| |||||| ||||||||||||||    
T  7590402 ttttcttcgtctttattcttacaatcggttaccaatttcatttcaagaacatcaaatttcttcatcttctt 7590332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 606 - 684
Target Start/End: Complemental strand, 32166706 - 32166628
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    |||||| |||| ||| ||||||||||| | ||||| ||||||||||||||||||| ||| ||||| | |||||||||||    
T  32166706 tcttactatcaattatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctc 32166628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 607 - 684
Target Start/End: Original strand, 12736059 - 12736136
Alignment:
Q  607 cttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    |||||||| ||||||||||| |||||||  |||| |||||||||||||||||||| || ||||| |||| | ||||||    
T  12736059 cttacaattagttaccatttccatcttaataacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctc 12736136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 23630723 - 23630668
Alignment:
Q  66 caaaactccattggatttaaagcaccatctccatccaaatcaccttccattagcat 121  Q
    |||||||||||| | || | ||||||||||||||| ||||||||||||||||||||    
T  23630723 caaaactccatttggttaagagcaccatctccatcaaaatcaccttccattagcat 23630668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 606 - 683
Target Start/End: Complemental strand, 35574711 - 35574634
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatct 683  Q
    ||||||||| |||||| |||||||||||| ||||| |||| || |||||||| |||||| ||||| | |||| |||||    
T  35574711 tcttacaattagttacgattttcatcttaagaacatcaaattttttcatctcattcattcaacatgtcatctccatct 35574634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 592
Target Start/End: Original strand, 34695817 - 34695880
Alignment:
Q  529 ttttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttca 592  Q
    |||||||||||||||||  |||||||||||| ||||||| ||| || | ||||||| |||||||    
T  34695817 ttttcttcatctttattcttacaatcagttatcattttcttttcaaaattatcaaatttcttca 34695880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 599
Target Start/End: Original strand, 31475009 - 31475096
Alignment:
Q  510 ctatcagagaacaattatattttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 599  Q
    |||||| |||| ||| ||||||||||| |||| |||| |  |||||||||| ||||| || | ||||| |||||||||||||||||||||    
T  31475009 ctatcaaagaaaaatcatattttcttcctctt-atttttg-aatcagttactatttttatctcaagaacatcaaacttcttcatcttctt 31475096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 616 - 677
Target Start/End: Complemental strand, 37010406 - 37010345
Alignment:
Q  616 agttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 677  Q
    ||||||||||||||||| |  |||| ||||||| ||||| || |||||||||||| ||||||    
T  37010406 agttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatct 37010345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 643 - 684
Target Start/End: Original strand, 40700887 - 40700928
Alignment:
Q  643 aaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    |||||| ||||| |||||||||||||||| ||||||||||||    
T  40700887 aaactttttcatatccttcatttaacatacgatcttcatctc 40700928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 529 - 569
Target Start/End: Original strand, 39280941 - 39280981
Alignment:
Q  529 ttttcttcatctttatttctacaatcagttaccattttcat 569  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  39280941 ttttcttcatctttattcttaaaatcagttaccattttcat 39280981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 609 - 675
Target Start/End: Original strand, 32047181 - 32047247
Alignment:
Q  609 tacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 675  Q
    |||| ||| ||||||||||||||| | ||||| |||||||||||||||| |||||| ||||||||||    
T  32047181 tacattcatttaccattttcatctcaagaacatcaaacttcttcatctcattcattcaacatatgat 32047247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 615 - 675
Target Start/End: Original strand, 23577164 - 23577224
Alignment:
Q  615 cagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 675  Q
    |||||||||||||||||| |  |||| || |||||| ||||||||||||| ||||| ||||    
T  23577164 cagttaccattttcatctcaaaaacatcatacttctccatctccttcattcaacatctgat 23577224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 606 - 670
Target Start/End: Original strand, 32342604 - 32342668
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 670  Q
    ||||||||||| ||| ||||||||||| |  |||| ||||||| |||||||| |||||| |||||    
T  32342604 tcttacaatcaattatcattttcatctcaaaaacatcaaactttttcatctcattcattcaacat 32342668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 606 - 687
Target Start/End: Original strand, 22050856 - 22050937
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctcatt 687  Q
    ||||||||| ||||| |||||| ||||||  ||||  ||  |||||||||||||||||| ||||| ||||||||||||||||    
T  22050856 tcttacaattagttatcatttttatcttaaaaacaataagtttcttcatctccttcattcaacatgtgatcttcatctcatt 22050937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 606 - 677
Target Start/End: Complemental strand, 15131646 - 15131575
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatct 677  Q
    |||||| ||||||||||||||| |||| | ||||| |||| |||||||||||||||||| | ||| ||||||    
T  15131646 tcttactatcagttaccatttttatctcaagaacatcaaatttcttcatctccttcattcagcatgtgatct 15131575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 528 - 599
Target Start/End: Complemental strand, 20512915 - 20512844
Alignment:
Q  528 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 599  Q
    ||||||||||||||||||| || ||||| ||  ||||||||| |||  || |||||||||||||||||||||    
T  20512915 attttcttcatctttatttttaaaatcaattgtcattttcatcttataaacatcaaacttcttcatcttctt 20512844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 548 - 599
Target Start/End: Original strand, 25062497 - 25062548
Alignment:
Q  548 tacaatcagttaccattttcattttaagaatatcaaacttcttcatcttctt 599  Q
    |||||||| ||||| ||||||| | |||||||||||||||||||||||||||    
T  25062497 tacaatcaattaccgttttcatctcaagaatatcaaacttcttcatcttctt 25062548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 623 - 684
Target Start/End: Original strand, 25062340 - 25062401
Alignment:
Q  623 attttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    ||||| |||||  ||||| ||||||||||||||| ||||||| ||||| |||||||||||||    
T  25062340 atttttatcttcagaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctc 25062401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 670
Target Start/End: Complemental strand, 20512882 - 20512834
Alignment:
Q  622 cattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 670  Q
    |||||||||||||  |||| ||||||||||||||| |||||||||||||    
T  20512882 cattttcatcttataaacatcaaacttcttcatcttcttcatttaacat 20512834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 637 - 677
Target Start/End: Original strand, 22050732 - 22050772
Alignment:
Q  637 aacaccaaacttcttcatctccttcatttaacatatgatct 677  Q
    |||| ||||||||||||| ||||||||||||||| ||||||    
T  22050732 aacatcaaacttcttcatttccttcatttaacatgtgatct 22050772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 606 - 670
Target Start/End: Original strand, 39341203 - 39341267
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacat 670  Q
    |||||| || ||||||||||||||||||| ||| | ||||||| ||||||||||||||| |||||    
T  39341203 tcttactatgagttaccattttcatcttaagaatatcaaactttttcatctccttcattcaacat 39341267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 606 - 669
Target Start/End: Original strand, 54437810 - 54437873
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaaca 669  Q
    |||||||||||||||||||||| |||| |  |||| ||||||||||||||| | ||||||||||    
T  54437810 tcttacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttcctcatttaaca 54437873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 684
Target Start/End: Complemental strand, 20519365 - 20519289
Alignment:
Q  608 ttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    |||||||| || ||||||||||||| | ||||  |||| ||||||||||| |||||| ||||| |||||| ||||||    
T  20519365 ttacaatccgtaaccattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctc 20519289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 595
Target Start/End: Original strand, 39341213 - 39341253
Alignment:
Q  555 agttaccattttcattttaagaatatcaaacttcttcatct 595  Q
    ||||||||||||||| ||||||||||||||||| |||||||    
T  39341213 agttaccattttcatcttaagaatatcaaactttttcatct 39341253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 684
Target Start/End: Original strand, 54437653 - 54437719
Alignment:
Q  618 ttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctc 684  Q
    ||||||||||||||| |  ||||  |||||||||||| ||||||||||||||| | | |||||||||    
T  54437653 ttaccattttcatctcaataacattaaacttcttcatatccttcatttaacatgtaaacttcatctc 54437719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 687
Target Start/End: Original strand, 48646416 - 48646496
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgatcttcatctcatt 687  Q
    ||||| ||||| | ||||||||||||||| ||||| ||||||| ||||| | ||||||| |||||||| |||  ||||||||    
T  48646416 tcttataatcaatgaccattttcatcttaagaacatcaaactt-ttcatattcttcattcaacatatggtctctatctcatt 48646496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 597
Target Start/End: Original strand, 54437813 - 54437862
Alignment:
Q  548 tacaatcagttaccattttcattttaagaatatcaaacttcttcatcttc 597  Q
    ||||||||||||||||||| || | || || |||||||||||||||||||    
T  54437813 tacaatcagttaccattttaatctcaaaaacatcaaacttcttcatcttc 54437862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 607 - 675
Target Start/End: Complemental strand, 42091861 - 42091793
Alignment:
Q  607 cttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 675  Q
    |||||||| | ||| ||||||||||| |  |||| ||||||| |||||||| |||||||||||| ||||    
T  42091861 cttacaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 466 - 599
Target Start/End: Complemental strand, 5586 - 5452
Alignment:
Q  466 agttttttctacattatcccttgaataattgagggtaatataccc-tatcagagaacaattatattttcttcatctttatttctacaatcagttaccatt 564  Q
    |||||||||||||||| | ||| |  |||||| |||||| ||||| ||||| | || ||| |  ||||||||||||||||   || |||||| ||| |||    
T  5586 agttttttctacattacctcttaacgaattgaaggtaatttacccatatcaaataaaaataactttttcttcatctttatccttaaaatcaggtacaatt 5487  T
Q  565 ttcattttaagaatatcaaacttcttcatcttctt 599  Q
    ||||| | || || |||||||||||||||||||||    
T  5486 ttcatctcaaaaagatcaaacttcttcatcttctt 5452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 606 - 675
Target Start/End: Complemental strand, 62798 - 62729
Alignment:
Q  606 tcttacaatcagttaccattttcatcttaggaacaccaaacttcttcatctccttcatttaacatatgat 675  Q
    ||||| ||||||||| || ||||||||||  |||| |||||||||| ||||||||||| ||| |||||||    
T  62798 tcttagaatcagttatcaatttcatcttaaaaacatcaaacttctttatctccttcatataagatatgat 62729  T

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Target: scaffold1743 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 595
Target Start/End: Original strand, 771 - 837
Alignment:
Q  528 attttcttcatctttatttctacaatcagttaccattttcattttaagaatatcaaacttcttcatct 595  Q
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T  771 attttcttcatttttatttttaca-tcatttatcattttcctttcaagtatatcaaacttcttcatct 837  T

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