View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_high_42 (Length: 219)
Name: NF11825_high_42
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 5644126 - 5643935
Alignment:
| Q |
18 |
gatttcagtttgaaaattatgttttcattgtgtatgatttcattttgaaaatttgtgttttagtgttcatttatttgattccatttcatgttgaaaagtt |
117 |
Q |
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| T |
5644126 |
gatttcagtttgaaaattatgttttcattgtgtatgatttcattttaaaaatttgtgttttagtgttcatttatttgataccatttcatgttgaaaagtt |
5644027 |
T |
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| Q |
118 |
tgtgtttttggattcatttatttgatttcatgctgaaaatattgtattattgattttgttccatgttgagaatatcttgtcttagggttcat |
209 |
Q |
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| T |
5644026 |
tgtgtttttggattcatttatttgatttcatgctgaaaatattgtattattgattttgttccatgttgagaatatcttgtcttagggttcat |
5643935 |
T |
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