View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_high_9 (Length: 465)
Name: NF11825_high_9
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 45650353 - 45650550
Alignment:
| Q |
14 |
aggtctgatcacgtttttaatttaaattatatgcttgttata--ttacctgcttattatgactatttcttgttttaattctcgtcaatttcttccacaga |
111 |
Q |
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| T |
45650353 |
aggtctgatcacgtttttaatttaaattatatgcttgttatatattacctgcttattatgactatttcttgttttaattctcgtcaatttcttccacaga |
45650452 |
T |
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| Q |
112 |
atannnnnnnnnnnnnnnacaaagtttttatatcttctacggagtaagttatagattcgctgttttaagtaaatcaatttataaaacaattacaatat |
209 |
Q |
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| T |
45650453 |
atattttttcatttttttacaaagtttttatatcttctacggagtaagttatagattcgctgttttaagtaaatcaatttataaaacaattacaatat |
45650550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 226 - 450
Target Start/End: Original strand, 45650610 - 45650834
Alignment:
| Q |
226 |
tatatgcttataagatactcttgaggtttttccttgttaattt-catactattttttaagtgagattcattgcaaaataagatagtatnnnnnnnnnnnn |
324 |
Q |
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| T |
45650610 |
tatatactaataagatattcttgaggtttttccttattaattttcatactattttttaagtgagattcattgcaaaataagatagtattctctctctcaa |
45650709 |
T |
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| Q |
325 |
nnnnnnacaccatgttgataaatttagctttacttctagcaactatgttgtttgttctgacgccaatgacc----tattcttgcaaattaaacagcttag |
420 |
Q |
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| T |
45650710 |
tc----acaccatgttgataaatttagctttacttctagcaactatgttgtttgttctgacgccaatgacctatatattcttgcaaattaaac-gcttag |
45650804 |
T |
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| Q |
421 |
atgccttttaatttctttagtatatgaact |
450 |
Q |
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| T |
45650805 |
atgccttttaatttctttagtatatgaact |
45650834 |
T |
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