View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_low_1 (Length: 1067)
Name: NF11825_low_1
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Original strand, 42662622 - 42663067
Alignment:
| Q |
14 |
cagagagaggtaatatagccaaagttggatctgcagctttcaaaactaaagaatgtatacatcttgaagttatgtgaagctcttcagctaaaggtaaaac |
113 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662622 |
cagagagaggtaagatagccaaagttggatctgcagctttcaaaactaaagaatgtatacatcttgaagttatgtgaagctcttcagctaaaggtaaaac |
42662721 |
T |
|
| Q |
114 |
ctcttcacatgttttgagtgccttgagtgtgtctgtccattgaccaaatatgtggttaaggaaattttcagtttgtatcattaggtttccttctccataa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662722 |
atcttcacatgttttgagtgccttgagtgtgtctgtccattgaccaaatatgtggttaaggaaattttcagtttgtatcattaggtttccttctccataa |
42662821 |
T |
|
| Q |
214 |
tcctcactcatttgtagaaactcagctgcacatcttagaggaactacatttgatggagttagttccattttgacaccataacagaacctagcaataagga |
313 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662822 |
tcttcactcatttgtagaaactcagctgcacatcttagaggaactacatttgatggagttagttccattttgacaccataacagaacctagcaataagga |
42662921 |
T |
|
| Q |
314 |
gaaaggctttggctcctcctggtagatcatgaagttccaaaattgacttctcactgtcacttggtatatctttcatgaaacgttccagttctttacttct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662922 |
gaaaggctttggctcctcctggtagatcatgaagttccaaaattgacttctcactgtcacttggtatatctttcatgaaacgttccagttctttacttct |
42663021 |
T |
|
| Q |
414 |
tgatatcagtggaaactggtaataatacaagaaattaagggtttaa |
459 |
Q |
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| T |
42663022 |
tgatatcagtggaaactggtaataatacaagaaattaagggtttaa |
42663067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 563 - 1067
Target Start/End: Original strand, 42663834 - 42664342
Alignment:
| Q |
563 |
tttgaaaaaatgaaagtaattgaatgtaatatttgtgttggtgttggacacgaaatacaattttaatttgaagtgtcggtggtacatttattaaacttta |
662 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |
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| T |
42663834 |
tttgaaaaaatgaaagtaattgaatgtaatatttgtgttggtgttggacacgaaatacacttttgatttgaagtgtcgatggtacatttattaaacttta |
42663933 |
T |
|
| Q |
663 |
caatcatgagaaacttttttctccatcaagacgacttgaaaaattaataagaannnnnnnncccctaggtgtcaaatatatctatttccttttctatcat |
762 |
Q |
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| T |
42663934 |
caatcatgagaaacttttttctccatcaagacgacttgaaaaattaataagaattttttg--ccctaggtgtcaaatatatctatttccttttctatcat |
42664031 |
T |
|
| Q |
763 |
taggacttaggagcatgtaatgaaatttgtttctctattttccaagacttttaaaaaataattagtagcaaaattttcaataattggaatcatgaaaact |
862 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42664032 |
taggacttaggagcatgtaatgaaatttgtttctctattttccaagacttttaaaaaataattagtagcacaattttcaataattggaatcatgaaaact |
42664131 |
T |
|
| Q |
863 |
aagactcttaaagtttaagatttgttgaagagcaagttatgaattatggcgagtttgacgaaatcacatagacactgcgattttgttgaagtgtaacttt |
962 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||| |
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| T |
42664132 |
aagactcttaaagtttaagatttgttgaagagcaagttatgaattatgacgagtttgacgaaatcacatagacacttcaattttgttaaagtgtaacttt |
42664231 |
T |
|
| Q |
963 |
cgttgatatctatcaccatgattttgca------aatgtcaatcaaaatatgcattaaccttctcgtgagagtaatgaaacatatataccttgtggaggt |
1056 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
42664232 |
cgttgatatctatcaccatgattttgcaaaactcaatgtcaatcaaaatatgcattaaccttctcgttagagtaatgaaacatatataccttgtggagat |
42664331 |
T |
|
| Q |
1057 |
ggaaggatgca |
1067 |
Q |
| |
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||||||||||| |
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|
| T |
42664332 |
ggaaggatgca |
42664342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 477 - 571
Target Start/End: Original strand, 42663132 - 42663226
Alignment:
| Q |
477 |
atatatgagatactcttgatattttatgtattaaactgaagtgcaaacacaaaaaccaagcactctcccattgacaatgatagtaatttgaaaaa |
571 |
Q |
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| T |
42663132 |
atatatgagatactcttgatattttatgtattaaactgaagtgcaaacacaaaaaccaagcactctcccattgacaatgatagtaatttgaaaaa |
42663226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 557 - 591
Target Start/End: Complemental strand, 9018921 - 9018887
Alignment:
| Q |
557 |
tagtaatttgaaaaaatgaaagtaattgaatgtaa |
591 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| |
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| T |
9018921 |
tagtaatttgagaaaatgaaagtaattgaatgtaa |
9018887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 554 - 587
Target Start/End: Complemental strand, 10948818 - 10948785
Alignment:
| Q |
554 |
tgatagtaatttgaaaaaatgaaagtaattgaat |
587 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
10948818 |
tgatagtaatttgaaaaaatggaagtaattgaat |
10948785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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