View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_low_12 (Length: 427)
Name: NF11825_low_12
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_low_12 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 191 - 427
Target Start/End: Complemental strand, 18101450 - 18101214
Alignment:
| Q |
191 |
ggacaccacaaactgtcaaattctctgacacacttttcttcgaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgcatgctattatta |
290 |
Q |
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| T |
18101450 |
ggacaccacaaactgtcaaattctctgacacacttttcttcaaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgtatgctattatta |
18101351 |
T |
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| Q |
291 |
cccaatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaacataatac |
390 |
Q |
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| T |
18101350 |
cccaatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaacataatac |
18101251 |
T |
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| Q |
391 |
caaaaaatgcaatcattaactttccttttagctttct |
427 |
Q |
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| T |
18101250 |
caaaaaatgcaatcattagctttccttttagctttct |
18101214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 18101633 - 18101483
Alignment:
| Q |
7 |
agacttgaagacagacattgattcatagatgtatcaaagttctgattggtataaaatttaaaacaaggtaatgccacttgcaatcaaatcaaacaaggta |
106 |
Q |
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| T |
18101633 |
agacttgaagacagacattgattcatagatgtatcaaagttctgattggtataaaatttcaaacaaggtaatgccacttgcaatcaaatcaaacaaggta |
18101534 |
T |
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| Q |
107 |
aaatagtaaaataccacaaaatatgatgaagaaataacaatgacacacaag |
157 |
Q |
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| T |
18101533 |
aaatagtaaaataccacaaaatatgatgaagaaataacaatgacacacaag |
18101483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 191 - 427
Target Start/End: Complemental strand, 37859058 - 37858822
Alignment:
| Q |
191 |
ggacaccacaaactgtcaaattctctgacacacttttcttcgaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgcatgctattatta |
290 |
Q |
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| T |
37859058 |
ggacaccacaaactgtcaaattctctgacacacttttcttcaaagctttcaaaaccttgtgaaccatatcaactctcatttcatccgtatgctattatta |
37858959 |
T |
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| Q |
291 |
cccaatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaacataatac |
390 |
Q |
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| T |
37858958 |
cccaatccaatttatgtactaacaccaaacaaatttcccagcatctcacccactactccaaagtccaaactcaacacaatattcaaactcaacataatac |
37858859 |
T |
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| Q |
391 |
caaaaaatgcaatcattaactttccttttagctttct |
427 |
Q |
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| T |
37858858 |
caaaaaatgcaatcattagctttccttttagctttct |
37858822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 37859241 - 37859091
Alignment:
| Q |
7 |
agacttgaagacagacattgattcatagatgtatcaaagttctgattggtataaaatttaaaacaaggtaatgccacttgcaatcaaatcaaacaaggta |
106 |
Q |
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| T |
37859241 |
agacttgaagacagacattgattcatagatgtatcaaagttctgattggtataaaatttcaaacaaggtaatgccacttgcaatcaaatcaaacaaggta |
37859142 |
T |
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| Q |
107 |
aaatagtaaaataccacaaaatatgatgaagaaataacaatgacacacaag |
157 |
Q |
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| T |
37859141 |
aaatagtaaaataccacaaaatatgatgaagaaataacaatgacacacaag |
37859091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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