View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_low_13 (Length: 425)
Name: NF11825_low_13
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Complemental strand, 25716783 - 25716382
Alignment:
| Q |
9 |
gatgaacttcatgttttaacgtgaataggagaactttgttactttgtaaaccctgcttcagatttttcctgcttttgcttattgcttaaattcttctctt |
108 |
Q |
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| T |
25716783 |
gatgaacttcatgttttaacgtgaataggtgaaatttgtt---ttgtaaaccctgcttcagatttttcctgcttttgcttattgcttaaattcttctctt |
25716687 |
T |
|
| Q |
109 |
ttcttgaggaagaagaagcagaaaatcgcttatttgggcttttggatgcgggttacaattgggcttgtaagcgggtcatttttgacccaagttcaaactt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25716686 |
ttcttgaggaagaagaagcagaaaatcgcttatttgggcttttggatgcgggttacaattgggcttgtaagcgggtcatttttgacccaagttcaaactt |
25716587 |
T |
|
| Q |
209 |
cggataaatcttcggcagtttcttttctcaccatactctcttcacacgccctcctatatttcgaaaatcctttcctttaattatataat-cgaattccta |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| || |
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| T |
25716586 |
tggataaatcttcggcagtttcttttctcaccatactctcttcacacgccctcctttatttcgaaaatcctctcctttaattatataatatgaattctta |
25716487 |
T |
|
| Q |
308 |
ttggaagatttttagaatatacaatctaaaaactactaaaaccataatttttattttaattgacacaaatatctttgttgatcaccgtcttatccccata |
407 |
Q |
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|| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
25716486 |
ttcgaagatttttagattatacaatctaaaaactactaaaaccataattttaattttaattgatacaaatatctttgttgatcaccgtcttatctccata |
25716387 |
T |
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| Q |
408 |
aactg |
412 |
Q |
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||||| |
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| T |
25716386 |
aactg |
25716382 |
T |
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