View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_low_20 (Length: 324)
Name: NF11825_low_20
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 38341540 - 38341245
Alignment:
| Q |
16 |
ttacacctaatatttccaaaaacaaaacttcccgt--gaacattcttaccggatcacatcaacttggagtaggattgatcctcccaaactagtagctttt |
113 |
Q |
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| T |
38341540 |
ttacacctaatatttccaaaaacaaaacttcccgtatgaacattcttaccggatcacatcaacttggagtaggattgatcctcccaaactagtagctttt |
38341441 |
T |
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| Q |
114 |
tagaccggacattttttaatttgttagaatgaagggtgtttagggcggtttatgtgttttaagggtaaatgtacaaatgtagggtatgaagttaaatttt |
213 |
Q |
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| T |
38341440 |
taggccggacattttttaatttgttagaatgaagggtgtttagggcggtttatgtgttttaagggtaaatgtacaaatgtaggctatgaagttaaatttt |
38341341 |
T |
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| Q |
214 |
caatttgctcatatttcatctcttccggaccagaaccatacttttgtttttgtgatggccgggtttgaaccccaaattacatatattatgcgttgt |
309 |
Q |
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| T |
38341340 |
caatttgctcatatttcatctcttccggaccagaaccatacttttgtttttgtgatggccgggtttgaacctcggattacatatattatgtgttgt |
38341245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 38445733 - 38445509
Alignment:
| Q |
16 |
ttacacctaatatttccaaaaacaaaacttcccgt--gaacattcttaccggatcacatcaacttggagtaggattgatcctcccaaactagtagctttt |
113 |
Q |
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| T |
38445733 |
ttacacctaatatttccaaaaacaaaacttcccgtatgaacattcttaccggatcacatcaacttggagtaggattgatcctcccaaactagtagctttt |
38445634 |
T |
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| Q |
114 |
tagaccggacattttttaatttgttagaatgaagggtgtttagggcggtttatgtgttttaagggtaaatgtacaaatgtagggtatgaagttaaatttt |
213 |
Q |
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| T |
38445633 |
taggccggacattttttaatttgttagaatgaagggtgtttagggcggtttatgtgttttaagggtaaatgtacaaatgtaggctatgaagttaaatttt |
38445534 |
T |
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| Q |
214 |
caatttgctcatatttcatctcttc |
238 |
Q |
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| T |
38445533 |
caatttgctcatatttcatctcttc |
38445509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 38472362 - 38472267
Alignment:
| Q |
126 |
tttttaatttgttagaatgaagggtgtttagggcggtttatgtgttttaaggg-taaatgtacaaatgtagggtatgaagttaaattttcaatttg |
220 |
Q |
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| T |
38472362 |
ttttaaatttgttagaattaaaggtgtttagggtagtttatatgtttttaggggtaagagtataaatgtggggtatgaagttaaattttcaatttg |
38472267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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