View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11825_low_21 (Length: 322)

Name: NF11825_low_21
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11825_low_21
NF11825_low_21
[»] chr3 (1 HSPs)
chr3 (19-311)||(47151221-47151510)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 311
Target Start/End: Original strand, 47151221 - 47151510
Alignment:
Q  19 gttcctcttttgctagatcttcaagtatgtttcatcttaactcttgcaaagttgcaagaaacaaaaagaactaaactaatttgttttgaaattttgttta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  47151221 gttcctcttttgctagatcttcaagtatgtttcatcttaactcttgcaaagttgcaagaaacaaaaagaactaaact---ttgttttgaaattttgttta 47151317  T
Q  119 ggttgaagagagtagatacttgtttgaagcaaaaacgattaaaaagatggaaattttgatactttcaactcttggatggaagatgagtccagcaacacct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47151318 ggttgaagagagtagatacttgtttgaagcaaaaacgattaaaaagatggaaattttgatactttcaactcttggatggaagatgaatccagcaacacct 47151417  T
Q  219 ctttcttttattgattttatcataagaagacttggattgaaagatcatctaatttgttgggagttccttaagagatgtgaaggtgttcatctc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  47151418 ctttcttttattgattttatcataagaagacttggattgaaagaccatctaatttgttgggagtttcttaagagatgtgaaggtgttcttctc 47151510  T

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