View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_low_23 (Length: 307)
Name: NF11825_low_23
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 4939713 - 4939446
Alignment:
| Q |
11 |
cagagattttagaaaacaataaagtaacagataagtgtgacgtttactcctttggtaaaattctactagaagtggtatgcttggagaagttagaaaatgt |
110 |
Q |
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| T |
4939713 |
cagagattttagaaaacaataaagtaacagataagtgtgacgtttactcctttggtaatattctactagaagtggtatgcttggaaaagttagaaaatgt |
4939614 |
T |
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| Q |
111 |
taagagacagagactcccaatggaggagaatattgatgagtatctcaaaggaagcattgcaccaaaatgttgggaagtatttgtagatgtgacaaaaaga |
210 |
Q |
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| T |
4939613 |
t--gagacaaaggttcccaatagaagagaatattgatgagtatctcaaaggaagcattgcaccaaattgttgggaagtatttgtagatgtgacaaaaaga |
4939516 |
T |
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| Q |
211 |
tgtttac---aatatgatccaaatgaacgacc----aacaatgggtgaagtggaggtgcaacttgagttt |
273 |
Q |
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| T |
4939515 |
tgtttacaataatatgatccaaatgaacgaccaattaacaatgggtgaagtggaggtgcaacttgagttt |
4939446 |
T |
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