View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_low_24 (Length: 301)
Name: NF11825_low_24
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 24 - 285
Target Start/End: Original strand, 15396268 - 15396530
Alignment:
| Q |
24 |
gagatttatgtgcaaaatagatgcatagtagggatgcatatcaattgggttcagttttgtatggaatcgagatacaacacgcatatattgtaagatacta |
123 |
Q |
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| T |
15396268 |
gagatttatgtgcaaaatagatacatagtagagattcatatcaattgggttcagttttgtactgaatcgagatacaacaagcatatattgtaagatacta |
15396367 |
T |
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| Q |
124 |
atagccatgcatttgattgctcctgtggtgtttagaatatcataaacctattggaaacaacacaaccttttcaatcattaagcaagttatttagaatgat |
223 |
Q |
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| T |
15396368 |
atagccatgcatttgattgcacctgtggtgtttagaatatcataaacctattggaaacaacacaaccttttcaatcattaagcaagttatttagaatgat |
15396467 |
T |
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| Q |
224 |
gcgcaacc-ttttcaatcaccgcaatcatatcaattgggtgcagttttatttagaatgatgtg |
285 |
Q |
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| T |
15396468 |
gcgcaacctttttcaatcaccgcaatcatatcaattgggtgcagttttatttagaatgatgtg |
15396530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 15387754 - 15387939
Alignment:
| Q |
1 |
tagaatgaattgagaatcaaaatgagatttatgtgcaaaatagatgcatagtagggatgcatatcaattgggttcagttttgtatggaatcgagatacaa |
100 |
Q |
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| T |
15387754 |
tagaatgaattgagattcaaaatgagatttatgtggaaagtagatagaaagtagggattcatattaattgggtttagttttgtattgaatcgagatacga |
15387853 |
T |
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| Q |
101 |
cacgcatatattgtaagatactaatagccatgcatttgattgct----cctgtggtgtttagaatatcataaacctattggaaaca |
182 |
Q |
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| T |
15387854 |
cacgtgtatattgtaagatactaatggccatgcatttgattgattgcacccgtggtgtttagaatatcataaacttgttggaaaca |
15387939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 10953652 - 10953733
Alignment:
| Q |
20 |
aaatgagatttatgtgcaaaatagatgcatagtagggatgcatatcaattgggttcagttttgtatggaatcgagatacaac |
101 |
Q |
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| T |
10953652 |
aaatgaggttcatgttcaaaatagatgcatactagggattcgtatcaattatatttagttttgtattgaatctagatacaac |
10953733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 6179297 - 6179366
Alignment:
| Q |
63 |
atcaattgggttcagttttgtatggaatcgagatacaacacgcatatattgtaagatactaatagccatg |
132 |
Q |
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| T |
6179297 |
atcaattgggttcaatttagtatcaaattgagatacaacttgcatttatcgtaagatactaataaccatg |
6179366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 11207697 - 11207754
Alignment:
| Q |
77 |
gttttgtatggaatcgagatacaacacgcatatattgtaagatactaatagccatgca |
134 |
Q |
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| T |
11207697 |
gttttgtattgaatcgagatacaacttgcatgtattgtatgatactaataaccatgca |
11207754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 14161150 - 14161088
Alignment:
| Q |
36 |
caaaatagatgcatagtagggatgcatatcaattgggttcagttttgtatggaatcgagatac |
98 |
Q |
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| T |
14161150 |
caaaatagattcacactagggattcatatcgagtgggttcagttttgtatcgaatcaagatac |
14161088 |
T |
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