View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_low_33 (Length: 244)
Name: NF11825_low_33
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_low_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 46 - 244
Target Start/End: Complemental strand, 2561866 - 2561668
Alignment:
| Q |
46 |
aaatgtatatatagatcttccagcaatactaagataaatgtaattcaacattttttcaaaaagcataattttctcttgtaaatacttgatttttgtgctt |
145 |
Q |
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| T |
2561866 |
aaatgtatagatatatcttcccgcaatactaagataaatgtaattcaacattttttcaaaaagtataattttctcttgtaaatacttattttttgtgctt |
2561767 |
T |
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| Q |
146 |
aaatgtgtttttagtcttcttacaaaaaatagtcacgttcaggtgactaaagaaaccaatgtattggtaatatgcttccaatcctcaggacttgtttct |
244 |
Q |
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| T |
2561766 |
aaatgtgtttttggtcttcttaaaaaaaatagtcacgttcaggtgactaaagaaaccagtgtgttggtaatatgcttccaatcctcaggacttgtttct |
2561668 |
T |
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