View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_low_34 (Length: 243)
Name: NF11825_low_34
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 2561199 - 2560971
Alignment:
| Q |
1 |
caaacactagctaatgattagaagaagatgaacacgttagtcacttaataagaagtgttaagcaccatctttaaaaaggatattagcaactgaaggaacc |
100 |
Q |
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| T |
2561199 |
caaacactagctaatgattagaagaagatgaacacattagtcacttaatatgaagtgtcaagcaccatctttaaaaaggatattggcaactgaaggaacc |
2561100 |
T |
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| Q |
101 |
ccccatgttgtgttgccatgggttataatccttgtaggactgtttgtgttttgaccttcaacatattggtttttgctttctattgctttgaacctcttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2561099 |
ccccatgttgtgttgccatgggttataatccttgtaggactgtttgtgttttgaccttcaacatattggtttttgctttctactgctttgaacctcttgc |
2561000 |
T |
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| Q |
201 |
accttttcactttgtttccaactaatatg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2560999 |
accttttcactttgtttccaactaatatg |
2560971 |
T |
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