View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11825_low_39 (Length: 227)

Name: NF11825_low_39
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11825_low_39
NF11825_low_39
[»] chr5 (5 HSPs)
chr5 (60-211)||(8378255-8378413)
chr5 (68-126)||(15285332-15285390)
chr5 (70-126)||(13988250-13988306)
chr5 (70-126)||(36890380-36890436)
chr5 (70-126)||(11247195-11247251)
[»] chr1 (18 HSPs)
chr1 (68-126)||(7178232-7178290)
chr1 (68-126)||(46845777-46845835)
chr1 (68-126)||(527020-527078)
chr1 (70-126)||(1994956-1995012)
chr1 (70-126)||(2403048-2403104)
chr1 (70-126)||(27325751-27325807)
chr1 (70-126)||(44797589-44797645)
chr1 (68-126)||(39858350-39858408)
chr1 (70-126)||(1673372-1673428)
chr1 (70-125)||(29637333-29637388)
chr1 (68-126)||(15225112-15225170)
chr1 (68-126)||(33502645-33502703)
chr1 (68-129)||(40314092-40314153)
chr1 (70-126)||(13276587-13276643)
chr1 (70-126)||(32267588-32267644)
chr1 (68-124)||(49430585-49430641)
chr1 (68-126)||(6487731-6487789)
chr1 (77-126)||(40030841-40030890)
[»] chr8 (13 HSPs)
chr8 (70-126)||(14342312-14342368)
chr8 (68-126)||(2599534-2599592)
chr8 (68-124)||(41075718-41075774)
chr8 (68-126)||(28897998-28898056)
chr8 (68-126)||(45413659-45413717)
chr8 (68-121)||(8368492-8368545)
chr8 (70-126)||(1993763-1993819)
chr8 (68-124)||(31774729-31774785)
chr8 (70-126)||(43066027-43066083)
chr8 (68-124)||(16465733-16465789)
chr8 (65-108)||(7313527-7313570)
chr8 (72-126)||(4077086-4077140)
chr8 (76-126)||(44081070-44081120)
[»] chr2 (14 HSPs)
chr2 (70-126)||(36272784-36272840)
chr2 (68-126)||(3121613-3121671)
chr2 (70-126)||(13697088-13697144)
chr2 (70-126)||(40095266-40095322)
chr2 (72-126)||(14945861-14945915)
chr2 (68-126)||(33299982-33300040)
chr2 (70-123)||(36709314-36709367)
chr2 (68-125)||(42081433-42081490)
chr2 (70-126)||(32599371-32599427)
chr2 (68-123)||(24475822-24475877)
chr2 (70-126)||(14242638-14242694)
chr2 (70-126)||(17823582-17823638)
chr2 (74-126)||(23860291-23860343)
chr2 (78-126)||(37143091-37143139)
[»] chr6 (6 HSPs)
chr6 (68-126)||(23915975-23916033)
chr6 (70-126)||(14314109-14314165)
chr6 (70-126)||(9045836-9045892)
chr6 (77-126)||(34792781-34792830)
chr6 (70-126)||(1244679-1244735)
chr6 (73-126)||(9521943-9521996)
[»] chr4 (17 HSPs)
chr4 (68-126)||(24059254-24059312)
chr4 (70-126)||(17044006-17044062)
chr4 (70-126)||(25164594-25164650)
chr4 (70-126)||(37605814-37605870)
chr4 (68-128)||(51579321-51579381)
chr4 (70-126)||(55281211-55281267)
chr4 (68-126)||(5817501-5817559)
chr4 (68-126)||(32290217-32290275)
chr4 (70-131)||(3287082-3287143)
chr4 (70-126)||(43749095-43749151)
chr4 (70-126)||(45996017-45996073)
chr4 (68-126)||(32525143-32525201)
chr4 (68-124)||(41277220-41277276)
chr4 (68-126)||(20107113-20107172)
chr4 (68-123)||(42179258-42179313)
chr4 (80-126)||(39631271-39631317)
chr4 (68-126)||(50498213-50498271)
[»] chr3 (12 HSPs)
chr3 (68-126)||(23004759-23004817)
chr3 (70-131)||(38247796-38247857)
chr3 (70-126)||(9271113-9271169)
chr3 (70-126)||(12224126-12224182)
chr3 (70-126)||(50989206-50989262)
chr3 (70-126)||(51092338-51092394)
chr3 (68-126)||(8330713-8330771)
chr3 (68-125)||(33288136-33288193)
chr3 (68-123)||(39947278-39947333)
chr3 (70-124)||(48034932-48034986)
chr3 (70-123)||(8496712-8496765)
chr3 (68-125)||(46135531-46135588)
[»] chr7 (6 HSPs)
chr7 (70-126)||(46576365-46576421)
chr7 (68-123)||(31741049-31741104)
chr7 (68-126)||(42974499-42974557)
chr7 (70-126)||(48460662-48460718)
chr7 (77-122)||(33496506-33496551)
chr7 (79-123)||(47480144-47480188)
[»] scaffold0933 (1 HSPs)
scaffold0933 (70-124)||(3176-3231)


Alignment Details
Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 60 - 211
Target Start/End: Complemental strand, 8378413 - 8378255
Alignment:
Q  60 caaagataacaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcac-------tagtataatcatctttcattttttgtct 152  Q
    |||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  8378413 caaagataacaactgtgtgtggatgtacaaatggtacatgtcatctaaggtggtctatgtatcaccactctttagtataatcatctttcattttttgtct 8378314  T
Q  153 tctcttaatatacgtaaaatgcttgtaggacaaattgagtagtatgttaacatggcaat 211  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8378313 tttcttaatatacgtaaaatgcttgtaggacaaattgagtagtatgttaacatggcaat 8378255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 15285390 - 15285332
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||    
T  15285390 acaattgtgtatgagtgtataagtggtacatgccatctaaggtggtctatgtatcacta 15285332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 13988306 - 13988250
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  13988306 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 13988250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 36890436 - 36890380
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  36890436 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 36890380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 11247251 - 11247195
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||||| |||| || | ||| ||| |||||||||| |||||||||||||||    
T  11247251 aattgtgtgtggatgtacaagtagtatatgccatctaaggtagtctatgtatcacta 11247195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 7178232 - 7178290
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  7178232 acaattgtatgtgggtgtacaaatggtacatgtcacctaaggtggtctatgtatcacta 7178290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 46845777 - 46845835
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  46845777 acaattgtgtatgggtgtataagtggtacatgccatctaaggtggtctatgtatcacta 46845835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 527020 - 527078
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||| ||||||||||| ||||||||| || |||||||||||||||||||||||    
T  527020 acaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcacta 527078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 1995012 - 1994956
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  1995012 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 1994956  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 2403048 - 2403104
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| |||||||| |||||||||||||||||    
T  2403048 aattgtgtgtgggtgtacaagtggtacatgccatctaagatggtctatgtatcacta 2403104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 27325751 - 27325807
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  27325751 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 27325807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 44797589 - 44797645
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  44797589 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 44797645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 39858408 - 39858350
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||| ||||||||||| ||||| ||| || |||||||||||||||||||||||    
T  39858408 acaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatcacta 39858350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 1673428 - 1673372
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || ||||| |||||||||||||||||    
T  1673428 aattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcacta 1673372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 125
Target Start/End: Original strand, 29637333 - 29637388
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcact 125  Q
    ||||||||||||||||| || ||||||||| || ||||| ||||||||||||||||    
T  29637333 aattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcact 29637388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 15225112 - 15225170
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||  ||||||||||||| | ||||||| || |||||||||||||||||||||||    
T  15225112 acaattgcatgtgggtgtataagttgtacatgccacctaaggtggtctatgtatcacta 15225170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 33502645 - 33502703
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||  ||| |||||| || ||||||||||||||||| ||||||||||||||||||    
T  33502645 acaattgcatgtaggtgtacaagtggtacatgtcatctaatgtggtctatgtatcacta 33502703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 40314153 - 40314092
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcactagta 129  Q
    |||||||||| ||| ||||||||||||||||   | |||||||||| |||||||||||||||    
T  40314153 acaattgtgtatggatgtataaatggtacatactacctaaggtggtttatgtatcactagta 40314092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 13276587 - 13276643
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||| || |||||||| ||||||||  || |||||||||||||||||||||||    
T  13276587 aattgtgtatgagtgtataagtggtacataccacctaaggtggtctatgtatcacta 13276643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 32267588 - 32267644
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| |||| ||||||| ||  |||| |||||||||||||||||    
T  32267588 aattgtgtgtgggtgtacaaattgtacatgccacttaagatggtctatgtatcacta 32267644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 49430585 - 49430641
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcac 124  Q
    |||||||||| | | ||||||| ||||||||| || |||||||||||||||||||||    
T  49430585 acaattgtgtattgatgtataagtggtacatgccacctaaggtggtctatgtatcac 49430641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 6487789 - 6487731
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||||||| |||| || ||||||||| || ||||  |||||||||||||||||    
T  6487789 acaattgtgtgtggatgtacaagtggtacatgccacctaaattggtctatgtatcacta 6487731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 40030890 - 40030841
Alignment:
Q  77 tgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||| || |||||||||  | |||||||||||||||||||||||    
T  40030890 tgtgggtgtacaagtggtacatgctacctaaggtggtctatgtatcacta 40030841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 14342312 - 14342368
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  14342312 aattgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatcacta 14342368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 2599592 - 2599534
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||| ||||||||||| ||||||||| || |||||||||||||||||||||||    
T  2599592 acaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatcacta 2599534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 41075718 - 41075774
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcac 124  Q
    |||||||| |||||||||| || |||||||||||| |||||||||||||||||||||    
T  41075718 acaattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 41075774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 28898056 - 28897998
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||| ||||||||||| ||||| ||| || |||||||||||||||||||||||    
T  28898056 acaattgtgtatgggtgtataagtggtatatgccacctaaggtggtctatgtatcacta 28897998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 45413659 - 45413717
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||| ||| ||||||| ||||||||| || |||||||||||||||||||||||    
T  45413659 acaattgtgtatggatgtataagtggtacatgccacctaaggtggtctatgtatcacta 45413717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 8368492 - 8368545
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtat 121  Q
    ||||||||||||||||||| || ||||||||| || ||||||||||||||||||    
T  8368492 acaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtat 8368545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 1993763 - 1993819
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || || |||||| || |||||||||||||||||||||||    
T  1993763 aattgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatcacta 1993819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 31774785 - 31774729
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcac 124  Q
    |||||||| |||| ||||| || |||||||||||| |||||||||||||||||||||    
T  31774785 acaattgtatgtgagtgtacaagtggtacatgtcacctaaggtggtctatgtatcac 31774729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 43066027 - 43066083
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||||| |||| || ||||||||| || |||||||||||||||||||||||    
T  43066027 aattgtgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatcacta 43066083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 16465733 - 16465789
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcac 124  Q
    |||||||| ||||||| || || ||||||||| | ||||||||||||||||||||||    
T  16465733 acaattgtatgtgggtatacaagtggtacatgccgtctaaggtggtctatgtatcac 16465789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 7313570 - 7313527
Alignment:
Q  65 ataacaattgtgtgtgggtgtataaatggtacatgtcatctaag 108  Q
    ||||||||||||||||||||||| | |||||||||||| |||||    
T  7313570 ataacaattgtgtgtgggtgtatcagtggtacatgtcacctaag 7313527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 4077086 - 4077140
Alignment:
Q  72 ttgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||||| || || ||||||||| || |||||||||||||| ||||||||    
T  4077086 ttgtgtgtgggtatacaagtggtacatgccacctaaggtggtctatatatcacta 4077140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 44081120 - 44081070
Alignment:
Q  76 gtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||| |||| ||||| |||||| ||||||||||||| ||||||||||||    
T  44081120 gtgtggatgtacaaatgatacatgccatctaaggtggtgtatgtatcacta 44081070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 36272784 - 36272840
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  36272784 aattgtgtgtgggtgtataagtggtacatgccacctaaggtggtctatgtatcacta 36272840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 3121671 - 3121613
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||    
T  3121671 acaattgtgtatgagtgtataagtggtacatgccatctaaggtggtctatgtatcacta 3121613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 13697088 - 13697144
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  13697088 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 13697144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 40095322 - 40095266
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||    
T  40095322 aattgtatgtggatgtacaagtggtacatgtcatctaaggtggtctatgtatcacta 40095266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 14945861 - 14945915
Alignment:
Q  72 ttgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  14945861 ttgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 14945915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 33300040 - 33299982
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||| | ||||||||||||||||||||| ||  ||||||||||||||||||||||    
T  33300040 acaattgtatatgggtgtataaatggtacatgccacttaaggtggtctatgtatcacta 33299982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 36709314 - 36709367
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatca 123  Q
    |||||||||||||||||||| ||||||||  || ||||| ||||||||||||||    
T  36709314 aattgtgtgtgggtgtataagtggtacataccacctaagatggtctatgtatca 36709367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 42081490 - 42081433
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcact 125  Q
    |||||||||| ||||||||||| |  |||||||||| |||||| ||||||||||||||    
T  42081490 acaattgtgtctgggtgtataagtaatacatgtcatttaaggtagtctatgtatcact 42081433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 32599371 - 32599427
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||| ||||||| |||| || ||||||||| || |||||||||||||||||||||||    
T  32599371 aattatgtgtggatgtacaagtggtacatgccacctaaggtggtctatgtatcacta 32599427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 24475822 - 24475877
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatca 123  Q
    |||||||||| ||||||||||| || |||||  || ||||||||||||||||||||    
T  24475822 acaattgtgtatgggtgtataagtgatacataccacctaaggtggtctatgtatca 24475877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 14242638 - 14242694
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| |  ||||||||  || ||||| |||||||||||||||||    
T  14242638 aattgtgtgtgggtgtacaggtggtacataccacctaagatggtctatgtatcacta 14242694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 17823638 - 17823582
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||| |||||||||| || || |||||  ||||||||||||| ||||||||||||    
T  17823638 aattgtatgtgggtgtacaagtgatacataccatctaaggtggtttatgtatcacta 17823582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 23860291 - 23860343
Alignment:
Q  74 gtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||| || || || ||||||||| || |||||||||||||||||||||||    
T  23860291 gtgtgtgagtatacaagtggtacatgccacctaaggtggtctatgtatcacta 23860343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 37143139 - 37143091
Alignment:
Q  78 gtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||| || || || ||||||||||||||||| ||||||||||||    
T  37143139 gtgggtgtagaagtgatatatgtcatctaaggtggtttatgtatcacta 37143091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 23916033 - 23915975
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  23916033 acaattgtgtatgggtgtataagtggtacatgccatctaaggtgatctatgtatcacta 23915975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 14314109 - 14314165
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  14314109 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 14314165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 9045892 - 9045836
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || || |||||| || |||||||||||||||||||||||    
T  9045892 aattgtgtgtgggtgtacaagtgatacatgccacctaaggtggtctatgtatcacta 9045836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 34792781 - 34792830
Alignment:
Q  77 tgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||| || ||||||||| || |||||||||||||||||||||||    
T  34792781 tgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 34792830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 1244679 - 1244735
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||||| |||| || ||||||||| ||  ||||||||||||||||||||||    
T  1244679 aattgtgtgtggatgtacaagtggtacatgccacttaaggtggtctatgtatcacta 1244735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 9521943 - 9521996
Alignment:
Q  73 tgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||||||| || ||||||||| || |||||||| ||||||||| ||||    
T  9521943 tgtgtgtgggtgtacaagtggtacatgccacctaaggtgatctatgtattacta 9521996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 24059254 - 24059312
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||    
T  24059254 acaattgtatgtgggtgtacaaatgatacatgccatctaaggtggtctatgtatcacta 24059312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 17044062 - 17044006
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  17044062 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 17044006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 25164594 - 25164650
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  25164594 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 25164650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 37605814 - 37605870
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  37605814 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 37605870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 51579381 - 51579321
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcactagt 128  Q
    |||||||| |||||||||| || ||||||||| || |||||||||||||||||||||||||    
T  51579381 acaattgtatgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactagt 51579321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 55281267 - 55281211
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  55281267 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 55281211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 5817501 - 5817559
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||||| || ||||||||| || ||||| |||||||||||||||||    
T  5817501 acaattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcacta 5817559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 32290275 - 32290217
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||| ||||||||||| ||||||||| || ||||| |||||||||||||||||    
T  32290275 acaattgtgtatgggtgtataagtggtacatgccacctaagatggtctatgtatcacta 32290217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 3287143 - 3287082
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcactagtata 131  Q
    ||||||||||||||||| || ||||||||  ||||||||||||| |||||||||||| ||||    
T  3287143 aattgtgtgtgggtgtacaagtggtacataccatctaaggtggtttatgtatcactattata 3287082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 43749151 - 43749095
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||| |||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  43749151 aattatgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 43749095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 45996017 - 45996073
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || ||||| |||||||||||||||||    
T  45996017 aattgtgtgtgggtgtacaagtggtacatgccacctaagatggtctatgtatcacta 45996073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 32525143 - 32525201
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||||||| ||||||| ||||| ||| || ||||| |||||||||||||||||    
T  32525143 acaattgtgtgtggatgtataagtggtatatgccacctaagatggtctatgtatcacta 32525201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 41277276 - 41277220
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcac 124  Q
    |||||||| |||||||||| |  |||||||||||| |||||||| ||||||||||||    
T  41277276 acaattgtatgtgggtgtacaggtggtacatgtcacctaaggtgatctatgtatcac 41277220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 20107172 - 20107113
Alignment:
Q  68 acaattgtgtgtggg-tgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||| ||| |||| || ||||||||| || |||||||||||||||||||||||    
T  20107172 acaattgtgtgcggggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 20107113  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 42179258 - 42179313
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatca 123  Q
    |||||||||  ||||||||||| ||||||||  || ||||||||||||||||||||    
T  42179258 acaattgtgcatgggtgtataagtggtacataccacctaaggtggtctatgtatca 42179313  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 39631271 - 39631317
Alignment:
Q  80 gggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||| || ||||||||| || |||||||||||||||||||||||    
T  39631271 gggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 39631317  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 50498271 - 50498213
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||| ||||||||||| ||||||||   | |||||||| ||||||||||||||    
T  50498271 acaattgtgtatgggtgtataagtggtacatactacctaaggtgatctatgtatcacta 50498213  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 23004817 - 23004759
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  23004817 acaattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 23004759  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 38247857 - 38247796
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcactagtata 131  Q
    ||||||||||||||||| || ||||||||| || ||||||||||||||||||||||| ||||    
T  38247857 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcactaatata 38247796  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 9271169 - 9271113
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||| |||||||||||| || ||||||||| ||||||||||||||||||||||||||    
T  9271169 aattatgtgtgggtgtacaagtggtacatgccatctaaggtggtctatgtatcacta 9271113  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 12224126 - 12224182
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| |||||||||||| || |||||||||| ||||||||||||    
T  12224126 aattgtgtgtgggtgtacaaatggtacatgccacctaaggtggtttatgtatcacta 12224182  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 50989262 - 50989206
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  50989262 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 50989206  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 51092394 - 51092338
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  51092394 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 51092338  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 8330713 - 8330771
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||||||||  |||| || ||||||||| ||||||||||||||||||||||||||    
T  8330713 acaattgtgtgtgaatgtacaagtggtacatgccatctaaggtggtctatgtatcacta 8330771  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 33288193 - 33288136
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcact 125  Q
    ||||||||||||||||||| || ||||||||  || ||||||||||||||||||||||    
T  33288193 acaattgtgtgtgggtgtacaagtggtacataccacctaaggtggtctatgtatcact 33288136  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 39947278 - 39947333
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatca 123  Q
    |||||||| ||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  39947278 acaattgtatgtgggtgtataagtggtacatgtcacttaaggtggtctatatatca 39947333  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 48034932 - 48034986
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcac 124  Q
    |||||| |||||||||| || |||||||||||| |||||||||| ||||||||||    
T  48034932 aattgtatgtgggtgtacaagtggtacatgtcacctaaggtggtttatgtatcac 48034986  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 8496765 - 8496712
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatca 123  Q
    |||||| |||||||| | || ||||||||| || ||||||||||||||||||||    
T  8496765 aattgtatgtgggtggacaagtggtacatgccacctaaggtggtctatgtatca 8496712  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 46135588 - 46135531
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcact 125  Q
    |||||||| ||| |||||| ||||| |||||| ||| |||| ||||||||||||||||    
T  46135588 acaattgtatgtaggtgtacaaatgatacatgccatttaagatggtctatgtatcact 46135531  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 46576365 - 46576421
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    ||||||||||||||||| || ||||||||| || |||||||||||||||||||||||    
T  46576365 aattgtgtgtgggtgtacaagtggtacatgccacctaaggtggtctatgtatcacta 46576421  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 31741104 - 31741049
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatca 123  Q
    |||||||||| ||||||||||| ||||||||| || ||||||||||||||||||||    
T  31741104 acaattgtgtatgggtgtataagtggtacatgccacctaaggtggtctatgtatca 31741049  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 42974499 - 42974557
Alignment:
Q  68 acaattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||||| ||||||||||||| ||||||||| || |||||||||| ||||||||||||    
T  42974499 acaattgtatgtgggtgtataagtggtacatgccacctaaggtggtttatgtatcacta 42974557  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 48460718 - 48460662
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatcacta 126  Q
    |||||| ||||| |||| |||||||||||| || |||||||||||||||||||||||    
T  48460718 aattgtatgtggatgtacaaatggtacatgccacctaaggtggtctatgtatcacta 48460662  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 33496551 - 33496506
Alignment:
Q  77 tgtgggtgtataaatggtacatgtcatctaaggtggtctatgtatc 122  Q
    |||||||||| || |||||||||||| |||||||||||||||||||    
T  33496551 tgtgggtgtacaagtggtacatgtcacctaaggtggtctatgtatc 33496506  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 47480144 - 47480188
Alignment:
Q  79 tgggtgtataaatggtacatgtcatctaaggtggtctatgtatca 123  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  47480144 tgggtgtacaaatggtacatgccacctaaggtggtctatgtatca 47480188  T

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Target: scaffold0933 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 124
Target Start/End: Original strand, 3176 - 3231
Alignment:
Q  70 aattgtgtgtgggtgtataaatggtacatgtcatctaaggtggtc-tatgtatcac 124  Q
    |||||| |||||||||| ||||||||||||||||||||| ||||| ||||||||||    
T  3176 aattgtatgtgggtgtacaaatggtacatgtcatctaagatggtcttatgtatcac 3231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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