View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_low_5 (Length: 580)
Name: NF11825_low_5
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 11 - 565
Target Start/End: Complemental strand, 3603003 - 3602449
Alignment:
| Q |
11 |
tgagatgaaaaattaatataagctaagaaacaaaaatcaaagcatacgaagtctcttccacgactaggaatcatcagctctagcgtttgcttcccatggg |
110 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3603003 |
tgagaagaaaaattaatataagctaagaaacaaaaatcaaagcatacgaagtctcttccacgactaggaatcatcagctctagcgtttgcttcccttggg |
3602904 |
T |
|
| Q |
111 |
cgtattgatgatgactcgatcaacgacaactccatgttcagtcatcataggtgaattaatcttgcataaagcctaggcgagttattttagaatagatgtt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602903 |
cgtattgatgatgactcgatcaacgacaactccatgttcagtcatcataggtgaattaatcttgcataaagcctaggcgagttattttagaatagatgtt |
3602804 |
T |
|
| Q |
211 |
ctgcaattgatcaattagtaactaactcactacattaaccaagggctaacttatggaaaccattttattaataacataaggatttgccaaaagctttatg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602803 |
ctgcaattgatcaattagtaactaactcactacattaaccaagggctaacttatggaaaccattttattaataacataaggatttgccaaaagctttatg |
3602704 |
T |
|
| Q |
311 |
atggttgataaaactaaattgaaaatttctttttccaacnnnnnnnnagactcttgagatatttagatctactgcttccgaactgattaacaatttgtgg |
410 |
Q |
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||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602703 |
atggttgataaaactaaatcgaaaatttctttttccaacttttttttagactcttgagatatttagatctactgcttccgaactgattaacaatttgtgg |
3602604 |
T |
|
| Q |
411 |
gtgttgtgatgtaaagttgtaaacttaccaggctaaaatttctgatcttaaaatcacgtacattattaaccattctgatacaaatttaaagaatgaacaa |
510 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602603 |
gtgttgtgatgtaaagttgtaaacttaccaggctaagatttctgatcttaaaatcacgtacattattaaccattctgatacaaatttaaagaatgaacaa |
3602504 |
T |
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| Q |
511 |
ataaaaaatatgatgccaaaatatagtacttgtttagtacattaaagaaaatctt |
565 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602503 |
ataaaaaatatgatgccaaaatatagtacttgtttagtacattaaagaaaatctt |
3602449 |
T |
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