View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11825_low_7 (Length: 529)
Name: NF11825_low_7
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_low_7 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 3427360 - 3427870
Alignment:
| Q |
1 |
ttgtatggctacttctcttcgaagtttccattgacatcattcgtttcgcttacgtattgctatctttggcgagacttgcaccactaacaacttgtgtttg |
100 |
Q |
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|||||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3427360 |
ttgtatggctacttctctctggagtttccattgacataatttgtttcgcttacgtattgctatctttggcgagacttgcaccactgacaacttgtgtttg |
3427459 |
T |
|
| Q |
101 |
ttctcttcaccgagtgtcattggatctggtggcggagctctctctcctccagctcctctgccgaagcatcatgcgagcaacac--tattggtgtgtgatt |
198 |
Q |
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||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3427460 |
ttctcttcaccgaatgtcattggatct-gtagcggagctctctctcctccagctcctctgccgaagcatcatgcgagcaacactttattggtgtgtgatt |
3427558 |
T |
|
| Q |
199 |
agtaccgtttgtattctagattcaattcgttagttgatttggttcaagcttgttggaaagttgcgtcattannnnnnnncgatgaagttaagaaattcaa |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
3427559 |
tgtaccgtttgtattctagattcaattcgttagttgatttggttcaagtttgttgcaaagttgcgtcatt-ttttttttcgatgaagttaagaaattcaa |
3427657 |
T |
|
| Q |
299 |
taattcaaaggtcagcctaccagtttgcctcttgacggggcgggtgtgtgttttgagcccaacagcttaggttcgcttgccccgtccaccctatttttgg |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| |
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| T |
3427658 |
taattcaaaggtcagcctaccagtttgcctcttgacggggcgggtgtgtgttttgtgcccaacaacttaggttagcatgccccgtccaccctatttttgg |
3427757 |
T |
|
| Q |
399 |
ggctaatagtgggtcgggcctaaactgggcaggtgaacccgtattgtcatcgctatgtggggaaagtgaccgagtgttgtaaattttgaggtactgaatt |
498 |
Q |
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| T |
3427758 |
ggctaatagtgggtcgggcctaaactgggcaagcgaacccgtattgtcatcgctatgtgaggaaagtgaccgagtgttgtaaattttgaggtactgaatt |
3427857 |
T |
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| Q |
499 |
tatatatatattg |
511 |
Q |
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| T |
3427858 |
tatatatatattg |
3427870 |
T |
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Back To:
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Target: scaffold0027 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 122 - 309
Target Start/End: Original strand, 118740 - 118925
Alignment:
| Q |
122 |
ggatctggtggcggagctctctctcctccagctcctctgccgaagcatcatgcgagcaacact--attggtgtgtgattagtaccgtttgtattctagat |
219 |
Q |
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|||| |||||| ||||||||||||||||||||| || |||||||| ||||| ||||| || | || |||||||| |||| |||| || || |||| |
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| T |
118740 |
ggatatggtggtggagctctctctcctccagctgctatgccgaagaatcatttaagcaaagcttcaacggcgtgtgatttgtacagtttataatccagat |
118839 |
T |
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| Q |
220 |
tcaattcgttagttgatttggttcaagcttgttggaaagttgcgtcattannnnnnnncgatgaagttaagaaattcaataattcaaagg |
309 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
118840 |
tcaattccttagttgatttggttcaagcttgttgcaaagttgcgtcattattttt----ggtgaagttaagaaattcaataattcaaagg |
118925 |
T |
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