View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11825_low_8 (Length: 478)
Name: NF11825_low_8
Description: NF11825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11825_low_8 |
 | |
|
| [»] scaffold0376 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 20478064 - 20478522
Alignment:
| Q |
18 |
acgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtgacatgtgcttct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478064 |
acgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtgacatgtgcttct |
20478163 |
T |
|
| Q |
118 |
tcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478164 |
tcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatg |
20478263 |
T |
|
| Q |
218 |
aaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478264 |
aaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggtcacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacg |
20478363 |
T |
|
| Q |
318 |
ccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20478364 |
ccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtaggtccaaaaccatccatctccaccaac |
20478463 |
T |
|
| Q |
418 |
aattgatttaaagtactttcacgctcatcatttgcagcacctccgcctatgctactcct |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
20478464 |
aattgatttaaagtactttcacgctcatcatttgcagcacctccgcctctactactcct |
20478522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 34 - 453
Target Start/End: Original strand, 38513561 - 38513980
Alignment:
| Q |
34 |
cttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtgacatgtgcttcttcagttcttgcagcta |
133 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||||| |||||||| | |
|
|
| T |
38513561 |
cttattaccctgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcgaaatgatcatgtgtgacgtgtgcttcttcagtccttgcagcaa |
38513660 |
T |
|
| Q |
134 |
tcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaag |
233 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38513661 |
tcagagcagcttcattgcaaacattagcaatatccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcgtggtcaag |
38513760 |
T |
|
| Q |
234 |
tttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagtaag |
333 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38513761 |
tttgatccctttcaagtaaatctgaaatatctggtcacgacctttgatgtcaggtttatcaattgttatttggcggtcaaaacgccccggtctaagtagg |
38513860 |
T |
|
| Q |
334 |
gctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaagtac |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38513861 |
gctttgtctaatacatcaggtctatttgtacctgccagcacaacaactccagcagtggttccaaaaccatccatctccaccaacaattgatttaaagtac |
38513960 |
T |
|
| Q |
434 |
tttcacgctcatcatttgca |
453 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
38513961 |
tttcacgttcatcatttgca |
38513980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 25 - 451
Target Start/End: Complemental strand, 29728866 - 29728440
Alignment:
| Q |
25 |
tccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtgacatgtgcttcttcagttc |
124 |
Q |
| |
|
|||| ||| ||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| |||||| |||||||||||||| | |
|
|
| T |
29728866 |
tcctgcttacttattacccggttcttcttctctaaaccgccaatgattctatcaatagctgcctcgaaatgatccattgtgacttgtgcttcttcagtcc |
29728767 |
T |
|
| Q |
125 |
ttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctc |
224 |
Q |
| |
|
| ||||| || |||||||||||||||||||| |||| ||| || ||||||| ||||||| ||||||||||||||||| | | |||| |||| |||| || |
|
|
| T |
29728766 |
tcgcagcaattagagcagcttcattgcaaacattagaaatatctgctccagtaaatccttgagtaagggatgcaagcctttttgaaaaatacaaaggttc |
29728667 |
T |
|
| Q |
225 |
ctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggt |
324 |
Q |
| |
|
||| |||||||||| | |||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||| || |||||||| || |
|
|
| T |
29728666 |
gtgggaaagtttgatcttgttcaagtaaatctgaaatatctggtcacgacctttgatgtcgggtttatcaactgttatttggcgatcgaaacgcccaggc |
29728567 |
T |
|
| Q |
325 |
ctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgat |
424 |
Q |
| |
|
|| || | ||||| ||||||| |||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29728566 |
ctgagcagagctttatctaatatatcaggtctattcgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatctccaccaacaattgat |
29728467 |
T |
|
| Q |
425 |
ttaaagtactttcacgctcatcatttg |
451 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
29728466 |
ttaaagtacgatcacgctcatcatttg |
29728440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 39 - 451
Target Start/End: Complemental strand, 24004449 - 24004037
Alignment:
| Q |
39 |
taccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtgacatgtgcttcttcagttcttgcagctatcaga |
138 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||| || | ||| ||||| |||||||| |||||| |
|
|
| T |
24004449 |
taccctgttcttcttctccaaaccaccaatgatcctatcgatagctgcctcgaaatgatccattgtgacttgcgattcatcagtccttgcagcaatcaga |
24004350 |
T |
|
| Q |
139 |
gcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttga |
238 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| | || ||||||||||||||||| ||||||||||||| |
|
|
| T |
24004349 |
gcagcttcattgcaaacattagcaatgtctgctccagcaaatcctggagtaagggctgcaagcctctgagaataatatgaaggctcgtggtcaagtttga |
24004250 |
T |
|
| Q |
239 |
tccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagtaaggcttt |
338 |
Q |
| |
|
| ||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||| || |
|
|
| T |
24004249 |
tttttttcaaataaatctgaaatatctggtcacgacctttaatgtcgggtacatcaattgatatcgtgcggtcaaaacgcccaggcctaagtaaggcgtt |
24004150 |
T |
|
| Q |
339 |
gtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaagtactttca |
438 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24004149 |
gtctaatatatcagctctatttgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatttccaccaacaattgatttaaagtactttca |
24004050 |
T |
|
| Q |
439 |
cgctcatcatttg |
451 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24004049 |
cgctcatcatttg |
24004037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 25 - 443
Target Start/End: Complemental strand, 3389 - 2971
Alignment:
| Q |
25 |
tccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtgacatgtgcttcttcagttc |
124 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||| ||||| ||||||| ||||||||| |||||||| |||||||||| ||||||||| |||| ||||| | |
|
|
| T |
3389 |
tcctgcttacttattaccatgttcttcttctctaaaccgccaatgaccctatcaatggctgcctcgaaatgatccttcgtgacatgttcttcatcagtcc |
3290 |
T |
|
| Q |
125 |
ttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctc |
224 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3289 |
ttgcagcaatcagagcagcttcattgcaaacattagcaatctccactccagaaaatcctggagtaagggatgcaagtctatgtgaataatatgaaggctc |
3190 |
T |
|
| Q |
225 |
ctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggt |
324 |
Q |
| |
|
| |||||||||||| || ||||||||||| ||||||||||| | ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
3189 |
attgtcaagtttgattctgttcaagtaaatttgaaatatctgatcgcgacctttgatgtcgggtttgtcaattgttatttggcggtcaaaacgccctggt |
3090 |
T |
|
| Q |
325 |
ctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgat |
424 |
Q |
| |
|
|||| || |||||||||||||||||||| |||||||||||| || ||||| |||||||||| ||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
3089 |
ctaactagggctttgtctaatacatcagctctatttgtaccagctagcacaacaactccagaagtggttccaaatccatccatctccaccaacaattgat |
2990 |
T |
|
| Q |
425 |
ttaaagtactttcacgctc |
443 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
2989 |
ttaaagtattttcacgctc |
2971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 45 - 451
Target Start/End: Complemental strand, 16838321 - 16837915
Alignment:
| Q |
45 |
gttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtgacatgtgcttcttcagttcttgcagctatcagagcagct |
144 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| |||||| |||||||||||||| || ||||| || ||||||||| |
|
|
| T |
16838321 |
gttcttcttctctaaaccgccaatgattctatcaatagctgcctcgaaatgatccattgtgacttgtgcttcttcagtcctcgcagcaattagagcagct |
16838222 |
T |
|
| Q |
145 |
tcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttgatccttt |
244 |
Q |
| |
|
||||| ||||| |||||||| || ||||||| ||||||| ||||||||||||||||| | | |||| |||| |||| || ||| |||||||||| | | |
|
|
| T |
16838221 |
tcattacaaacattagcaatctctgctccagtaaatccttgagtaagggatgcaagcctttttgaaaaatacaaaggttcgtgggaaagtttgatcttgt |
16838122 |
T |
|
| Q |
245 |
tcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagtaaggctttgtctaa |
344 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||| || |||||||| | || || | ||||| ||||| |
|
|
| T |
16838121 |
tcaagtaaatctgaaatatctggtcacgacctttgatgtcgggtttatcagctgttatttggcgatcgaaacgcccatgcctgagcagagctttatctaa |
16838022 |
T |
|
| Q |
345 |
tacatcaggtctatttgtacctgcgagcacgacaactccagcagtagttccaaaaccatccatctccaccaacaattgatttaaagtactttcacgctca |
444 |
Q |
| |
|
|| |||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16838021 |
tatatcaggtctattcgtacctgcaagcacaacaactccagcagtggttccaaaaccatccatctccaccaacaattgatttaaagtacgttcacgctca |
16837922 |
T |
|
| Q |
445 |
tcatttg |
451 |
Q |
| |
|
||||||| |
|
|
| T |
16837921 |
tcatttg |
16837915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 45285152 - 45284926
Alignment:
| Q |
30 |
cttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtgacatgtgcttcttcagttcttgca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| |||||| |
|
|
| T |
45285152 |
cttgcttattaccttgttcttcttctccaaaccaccgatgatcctatcaatagctgcctcaaaatgatcctttgtggcatgtgtttcttcagtacttgca |
45285053 |
T |
|
| Q |
130 |
gctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggt |
229 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45285052 |
gcaatcagagcagcttcattgcaaacattagcaatgtctgatccagcaaatcatggagtaagggatgcaagcttatgtgaataatatgaaggctcctggt |
45284953 |
T |
|
| Q |
230 |
caagtttgatccttttcaagtaaatct |
256 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
45284952 |
caagtttaatccttttcaagtaaatct |
45284926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 296 - 387
Target Start/End: Complemental strand, 45284926 - 45284835
Alignment:
| Q |
296 |
ttgttatttggcggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctatttgtacctgcgagcacgacaactccagca |
387 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
45284926 |
ttgttatttggaggtcaaaacgccccggcctaagtagggctttgtctaatacatcaggtctattggtacctgccagcacaacaactccagca |
45284835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 453
Target Start/End: Complemental strand, 45284842 - 45284797
Alignment:
| Q |
408 |
ctccaccaacaattgatttaaagtactttcacgctcatcatttgca |
453 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45284842 |
ctccagcaacaattgatttaaagtactttcaccctcatcatttgca |
45284797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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