View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_1 (Length: 1028)
Name: NF11826_high_1
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 868; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 868; E-Value: 0
Query Start/End: Original strand, 13 - 1011
Target Start/End: Original strand, 7553435 - 7554436
Alignment:
| Q |
13 |
caaaggtaaaagaattttaaagtatattagtagtttttatacaagttaatgtagcatgtatgccaatatggtggaatatttttggcctttaaaatgttgc |
112 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7553435 |
caaaggtaaaagagttttaaagtatattagtagtttttatacaagttaatgtagcatgtatgccaatatggtggaataattttggcctttaaaatgttgc |
7553534 |
T |
|
| Q |
113 |
aaaagatgcacagaagaaactggcagaactgtagttagagattttgaaagcatgtagtcatgtggactccttttatttcaaaagcctgtcagctataaaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7553535 |
aaaagatgcacagaagaaactggcagaactgtagttagagattttgaaagcatgtagtcatgtggactccttttatttcaaaagcctgttagctataaaa |
7553634 |
T |
|
| Q |
213 |
atgaggtgctaatttcttgagtattatcatatgagggctgctaaaatgtagaacttacttttcctaaaataattannnnnnnatcgtaaagctgtggaga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7553635 |
atgaggtgctaatttcttgagtattatcatatgagggctgctaaaatgtagaacttacttttcctaaaataattatttttttatcgtaaagctgtggaga |
7553734 |
T |
|
| Q |
313 |
attataagttgatgcaaggtagtaaaaatgagaagtctaaattgatattatccaaagtaagtggtttaaannnnnnnnnnnnnnnnnnacgtgaataatt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7553735 |
attataagttgatgcaaggtagtaaaaatgagaagtctaaattgatattatccaaagtaagtggtttaaattttgattttgattttttacgtgaataatt |
7553834 |
T |
|
| Q |
413 |
aattactcactacttgtcaaaaacaaaattaattactcactat---atgatatttatcctcaaaaatatctacaaaatctagtggtcaattcaattagct |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7553835 |
aattactcactacttgtcaaaaacaaaattaattactcactattatatgatatttatcctcaaaaatatctacaaaatctagtggtcaattcaattagct |
7553934 |
T |
|
| Q |
510 |
aatacaatttgggatttcaaatcacatgcacactaccaaaaacagaaaactctcttgcagatagtaaaatggataaataaactcttagttgcagcaacaa |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
7553935 |
aatacaatttgggatttcaaatcacatgcacactaccaaaaacagaaaactctcttgcagataataaaatggataaataaactcctagttgcagcaacaa |
7554034 |
T |
|
| Q |
610 |
aaagtatataggttaaagttttgtccaaaaacgaatatcattatgtaattgcaccatccaacaacataaaagaaacactacagagaatacaaagttataa |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7554035 |
aaagtatataggttaaagttttgtccaaaaacgaatatcattatgtaattgcaccatccaacaacataaaagaaacactacagagaatacaaagttataa |
7554134 |
T |
|
| Q |
710 |
cattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtnnnnnnngaaacatttgacattttagagtttgaacttcggcagagc |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
7554135 |
cattcttatcataactgacattaaaaaagtaaattctaacagaagtaaatctgtaaaaaaagaaaaatttgacattttagagtttgaacttcggcagagc |
7554234 |
T |
|
| Q |
810 |
atttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttcgtaactccaatcccatgcaggcggagcttctatccttctcaatg |
909 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7554235 |
atttcagaatactagtgaacaacacatccatggcgcgagtagagttccttcttttcgtaactccaatcccatgcaggcggagcttctatccttctcaatg |
7554334 |
T |
|
| Q |
910 |
atggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattctgcaaattaatctctttgagtagcgtgcagttttctaccacatg |
1009 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7554335 |
atggccttgaaactaccatctcgtcaacaatattgccattcactttaccacaattctgcaaattaatctctttgagtagcgtgcagttttctaccacatg |
7554434 |
T |
|
| Q |
1010 |
ct |
1011 |
Q |
| |
|
|| |
|
|
| T |
7554435 |
ct |
7554436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 654 - 721
Target Start/End: Complemental strand, 45056046 - 45055979
Alignment:
| Q |
654 |
gtaattgcaccatccaacaacataaaagaaacactacagagaatacaaagttataacattcttatcat |
721 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||| ||||||| ||||||| | |||||| |
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|
| T |
45056046 |
gtaattgcaccatccaacaacataaaagaaaccctagagagaacacaaagtgataacatacctatcat |
45055979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 547 - 593
Target Start/End: Complemental strand, 8047618 - 8047572
Alignment:
| Q |
547 |
aaaaacagaaaactctcttgcagatagtaaaatggataaataaactc |
593 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
8047618 |
aaaaacagaaaactctcttgcatataataaaatggataaataaactc |
8047572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 517 - 547
Target Start/End: Complemental strand, 48250053 - 48250023
Alignment:
| Q |
517 |
tttgggatttcaaatcacatgcacactacca |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
48250053 |
tttgggatttcaaatcacatgcacactacca |
48250023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 901 - 939
Target Start/End: Complemental strand, 3438824 - 3438786
Alignment:
| Q |
901 |
ttctcaatgatggccttgaaactaccatctcgtcaacaa |
939 |
Q |
| |
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|||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
3438824 |
ttctcaatgatggctttgaaaataccatctcgtcaacaa |
3438786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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