View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_10 (Length: 638)
Name: NF11826_high_10
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Complemental strand, 19396397 - 19395775
Alignment:
| Q |
1 |
caaggaaaaatgtgtaaccacacttaaagaggcattgaaaaaagaccctaaattgaaagaaccaaagggtcttctaatggttttcatgctagttgccaag |
100 |
Q |
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| T |
19396397 |
caaggaaaaatgtgtaaccacacttaaagaggcattgaaaaaagaccctaaattgaaagaaccaaagggtcttctaatggttttcatgctagttgccaag |
19396298 |
T |
|
| Q |
101 |
aatgaaattaacaacgcattcaacaaaaccgcgaacttgaaattcgcttccaaggaagaaaagggagcttatgaagattgtaaacagttgtttgaggatg |
200 |
Q |
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| T |
19396297 |
aatgaaattaacaacgcattcaacaaaaccgcgaacttgaaattcgcttccaaggaagaaaagggagcttatgaagattgtaaacagttgtttgaggatg |
19396198 |
T |
|
| Q |
201 |
ctaaagaagaaatgggattctcgatcactgaagtcgggcaacttgatattagcaaactagcttcaaaagaagctgagttgaacaattggcttagggctgt |
300 |
Q |
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| T |
19396197 |
ctaaagaagaaatgggattctcgatcactgaagtcgggcaacttgatattagcaaactagcttcaaaagaagctgagttgaacaactggcttagtgctgt |
19396098 |
T |
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| Q |
301 |
tatatcttaccaagacacttgttctgacggtttcccggaaggagaattgaagaaaaagatggagatgatatttgctgaatcaaggcaacttctgagcaac |
400 |
Q |
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| T |
19396097 |
tatatcttaccaggacacttgttctgacggtttcccggaaggagaattgaagaaaaagatggagatgatatttgctgaatcaaggcaacttctgagcaac |
19395998 |
T |
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| Q |
401 |
tccctcgctgttgtttcacaggtttctcaaattgttaatgcatttcaaggtggactttcaggattcaaattaccttggggtaaaacagatgcacatgctc |
500 |
Q |
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| T |
19395997 |
tccctcgctgttgtttcacaggtttctcaaattgttaatgcatttcaaggtggactttcaggattcaaattaccttggggtaaatcagatgcacatgctc |
19395898 |
T |
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| Q |
501 |
ccactcccgatgctgatgctgatgctgttgcggacgacgatgaggatcttgctgatgctcctgatggtgctcccggtgctgatcagccgatttttgaagc |
600 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19395897 |
ccgctcccgatgctgatactgatgctgttgcggacgacgatgaggatcttgctgatgctcctgatggtgctcccgatgctgatcagccgatttttgaagc |
19395798 |
T |
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| Q |
601 |
tcccattggtgctcctggtgctg |
623 |
Q |
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| T |
19395797 |
tcccattggtgctcctggtgctg |
19395775 |
T |
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