View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_12 (Length: 606)
Name: NF11826_high_12
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 18 - 594
Target Start/End: Complemental strand, 32313150 - 32312576
Alignment:
| Q |
18 |
catgagaaggttgtgaagcataatggggaatagggccattactaatcacactctaatcaatttgcagatgaaaacatttcaaaaacaactaacagagtat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32313150 |
catgagaaggttgtgaagcataatggggaatagggccattactaatcacactctaatcaatttgcagatgaaaacatttcaaaaacaactaacaaagtat |
32313051 |
T |
|
| Q |
118 |
agactatgcagcatagcaataaacttgcttacccagcagctcctattgaaacatgaaacttgtcttttaagattacatagagagtctaacatgctatgaa |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32313050 |
agactatgcagcatagcaataaacttgcttacccagcagctcctattgaaacatgaaacttgtcttttaagattacatagagagtctaacatgctatgaa |
32312951 |
T |
|
| Q |
218 |
aaattatattacattttttcgtcattttctaatttgtatctcactttctttcggaatattacacatcacaacaatgttggaatctgtgtggtttcacagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32312950 |
aaattatattacattttttcgtcattttctaatttgcatctcactttctttcggaatattacacatcacaacaatgttggaatctgtgtggtttcgcagt |
32312851 |
T |
|
| Q |
318 |
tctttcagccatgtatcgacgttctcaaatgtagcatggcgtgtaacatcatatacaagaagtgcaccaagtgccccacgatagtaagcacttgtgatgg |
417 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32312850 |
tctttcagccatgtatcgacgttctcaaatgttgcatggcgtgtaacatcatatacaagaagtgcaccaactgccccacgatagtaagcacttgtgatgg |
32312751 |
T |
|
| Q |
418 |
cgcgatacctgcagatagaaacaatgtgaattattaacatgagtttcatagtaaagccagttacaaaataataacaatggaccgtaaagcaagcaacaat |
517 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32312750 |
cgcgatacctgcagatagaaaca--gtgaattattaacatgagtttcatagtaaagccagttacaaaataataacaatggaccgtaaagcaagcaacaat |
32312653 |
T |
|
| Q |
518 |
atagtattgtgttcattcaggtggttagaagaccaaactacagatatcaagacaccgcttattgtactttctgcctt |
594 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32312652 |
gtagtattgtgttcattcaggtggttagaagaccaaactacagatatcaagacaccgcttattgtactttctgcctt |
32312576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 166 - 594
Target Start/End: Original strand, 32788168 - 32788621
Alignment:
| Q |
166 |
aaacatgaaacttgtcttttaagattacatagagagtctaacatgctatgaaaaattatattacatttttt--cgtcattttctaatttgtatctcactt |
263 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
32788168 |
aaacttgaaacttgtcttttaagattacatagagagtctaacatgctatgaaaaattaaattacattttttttcgtcattttctaatttgtatctcactc |
32788267 |
T |
|
| Q |
264 |
tctttcggaatattacacatcacaacaatgttggaatctgtgtggtttcacagttctttcagccatgtatcgacgttctcaaatgtagcatggcgtgtaa |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
32788268 |
tctttcggaatattacacatcacaacaatgttggaatctgtgtggtttcgcagttctttcagccatccgtcgacgttctcaaatgttgcatggcgtgtaa |
32788367 |
T |
|
| Q |
364 |
catcatatacaagaagtgcaccaagtgccccacgatagtaagcacttgtgatggcgcgatacctgcagatagaaacaatgtgaattattaacatgagttt |
463 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32788368 |
catcatatacaagaagtgcaccaactgccccatgatagtaagcacttgtgatgactcgatacctgcagatagaaacaatgtgaattattcacatgagttt |
32788467 |
T |
|
| Q |
464 |
catagtaaagccag--------------------ttacaaa---ataataacaatggaccgtaaagcaagcaacaatatagtattgtgttcattcaggtg |
540 |
Q |
| |
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| |||||||| ||| ||||||| || ||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
32788468 |
cttagtaaaggcagttacaaaaattggctgcttgttacaaatcaatcataacaatggagcgtaaagcaagcaacaatgtagtattgtgttcattcaggtg |
32788567 |
T |
|
| Q |
541 |
gttagaagaccaaactacagatatcaagacaccgcttattgtactttctgcctt |
594 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
32788568 |
gttagaagaccaaactatagatatcaagacaccgcttattgtactttctgcctt |
32788621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 281 - 485
Target Start/End: Complemental strand, 31792518 - 31792314
Alignment:
| Q |
281 |
catcacaacaatgttggaatctgtgtggtttcacagttctttcagccatgtatcgacgttctcaaatgtagcatggcgtgtaacatcatatacaagaagt |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||| | || ||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
31792518 |
catcacaacaatgttggaatctgtgtggtttcgcagttctttcaaccatctgtcaacgttttcaaatgttgcatggcgtgtaacatcatatacaagaagt |
31792419 |
T |
|
| Q |
381 |
gcaccaagtgccccacgatagtaagcacttgtgatggcgcgatacctgcagatagaaacaatgtgaattattaacatgagtttcatagtaaagccagtta |
480 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||| |
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| T |
31792418 |
gcaccaactgccccacgatagtaagcacttgtgatggcgcgatacctgcagatagaaacaatgtgaattataaacatgagtttcatagtaaagtcaatta |
31792319 |
T |
|
| Q |
481 |
caaaa |
485 |
Q |
| |
|
||||| |
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|
| T |
31792318 |
caaaa |
31792314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 131 - 283
Target Start/End: Complemental strand, 31793001 - 31792849
Alignment:
| Q |
131 |
tagcaataaacttgcttacccagcagctcctattgaaacatgaaacttgtcttttaagattacatagagagtctaacatgctatgaaaaattatattaca |
230 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
31793001 |
tagcaataaacttgcttccccagcagctcctattgaaacatgaaacttgtcttttaagattacatagagagtctaacatactatgaaaaattaaattaca |
31792902 |
T |
|
| Q |
231 |
ttttttcgtcattttctaatttgtatctcactttctttcggaatattacacat |
283 |
Q |
| |
|
|||||||||| | |||||||||||||||| || ||||||||||||||||||| |
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|
| T |
31792901 |
ttttttcgtcttcttctaatttgtatctctctcactttcggaatattacacat |
31792849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 508 - 572
Target Start/End: Complemental strand, 31792272 - 31792208
Alignment:
| Q |
508 |
aagcaacaatatagtattgtgttcattcaggtggttagaagaccaaactacagatatcaagacac |
572 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
31792272 |
aagcaacaatgcagcattgtgttcattcaggtggttagaagacaaaactacagatatcaagacac |
31792208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 4372986 - 4373075
Alignment:
| Q |
281 |
catcacaacaatgttggaatctgtgtggtttcacagttctttcagccatgtatcgacgttctcaaatgtagcatggcgtgtaacatcata |
370 |
Q |
| |
|
|||||| |||||||||| ||||||||||| || ||| || |||| ||| | || ||||| ||||||||| |||| |||||||||||||| |
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|
| T |
4372986 |
catcaccacaatgttggcatctgtgtggtctctcagctccttcaaccacctctccacgttttcaaatgtaacatgacgtgtaacatcata |
4373075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 32788087 - 32788123
Alignment:
| Q |
72 |
aatcaatttgcagatgaaaacatttcaaaaacaacta |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32788087 |
aatcaatttgcagatgaaaacatttaaaaaacaacta |
32788123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 32788139 - 32788174
Alignment:
| Q |
109 |
acagagtatagactatgcagcatagcaataaacttg |
144 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32788139 |
acagagtatagactatgcagcatagtaataaacttg |
32788174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 412
Target Start/End: Complemental strand, 34701602 - 34701471
Alignment:
| Q |
281 |
catcacaacaatgttggaatctgtgtggtttcacagttctttcagccatgtatcgacgttctcaaatgtagcatggcgtgtaacatcatatacaagaagt |
380 |
Q |
| |
|
|||||| || ||||||| ||||||||| | || ||| ||||| |||||| | || || || ||||||||| ||||||| ||||||||||| || | | |
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|
| T |
34701602 |
catcacgacgatgttggcatctgtgtgatctctcagctcttttagccatctctccacattttcaaatgtaacatggcgggtaacatcatagactaacaaa |
34701503 |
T |
|
| Q |
381 |
gcaccaagtgccccacgatagtaagcacttgt |
412 |
Q |
| |
|
|| |||| || |||||||||||||||||||| |
|
|
| T |
34701502 |
gcgccaacagctccacgatagtaagcacttgt |
34701471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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