View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11826_high_14 (Length: 601)

Name: NF11826_high_14
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11826_high_14
NF11826_high_14
[»] chr1 (3 HSPs)
chr1 (190-582)||(40516897-40517287)
chr1 (12-91)||(49610791-49610868)
chr1 (12-103)||(45064759-45064856)
[»] chr8 (4 HSPs)
chr8 (12-109)||(36936581-36936678)
chr8 (12-109)||(30272840-30272937)
chr8 (12-109)||(36936302-36936399)
chr8 (12-107)||(41092677-41092782)
[»] chr4 (11 HSPs)
chr4 (12-109)||(3619712-3619809)
chr4 (12-109)||(53290111-53290217)
chr4 (12-91)||(52757898-52757975)
chr4 (12-107)||(31634697-31634798)
chr4 (38-107)||(25654793-25654862)
chr4 (38-107)||(11681184-11681253)
chr4 (38-107)||(11689463-11689532)
chr4 (38-107)||(12589356-12589425)
chr4 (38-107)||(46765078-46765147)
chr4 (66-107)||(23383379-23383420)
chr4 (127-156)||(31634804-31634833)
[»] chr5 (2 HSPs)
chr5 (12-107)||(16970915-16971012)
chr5 (12-91)||(8226727-8226804)
[»] chr3 (3 HSPs)
chr3 (12-95)||(46721844-46721925)
chr3 (12-91)||(38742060-38742137)
chr3 (37-107)||(46740474-46740544)
[»] chr7 (2 HSPs)
chr7 (12-107)||(29315189-29315290)
chr7 (12-62)||(41224232-41224284)
[»] chr2 (2 HSPs)
chr2 (12-107)||(16427165-16427266)
chr2 (12-107)||(40992813-40992914)
[»] scaffold0180 (1 HSPs)
scaffold0180 (37-107)||(22211-22281)
[»] chr6 (2 HSPs)
chr6 (45-90)||(10607487-10607532)
chr6 (38-90)||(931751-931803)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 190 - 582
Target Start/End: Original strand, 40516897 - 40517287
Alignment:
Q  190 tataagatatgatgatgttaaatagacgaagcatccatcatcctggatgcctttaaatcaataaaaccttttagtaataggcaagggaccatgtgcgtga 289  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40516897 tataagatatgatgatgttaaatagacgaagcatccatcatcgtggatgcctttaaatcaataaaaccttttagtaataggcaagggaccatgtgcgtgg 40516996  T
Q  290 ggaggtgttatgagaacacaaaaagaagagcaaacaagattaaataagacattcatgacccgaacttgaannnnnnnnnggtcgaatccgaacttgaacc 389  Q
    |||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||         | |||||||| ||||||||||    
T  40516997 ggaggtgtt--gagaacacaaaaagaagagcaaacaaaattaaataagacattcatgacccgaacttgaatttttttttgatcgaatccaaacttgaacc 40517094  T
Q  390 ttgatcactatattatgccgccgccaaaagtttaatactccatcccggaacagattcaactctggcctaaccgcgctatatcaaacacatataccaccgt 489  Q
    ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40517095 ttgattacgatattatgccgccgccaaaagtttaatactccaccccggaacagattaaactctggcctaaccgcgctatatcaaacacatataccaccgt 40517194  T
Q  490 caccttgtgatcggcagtttgatcatgagaaaaggtacaagatttgatttaagtaaccatctgaaaaattcatggaagatttatatatataca 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40517195 caccttgtgatcggcagtttgatcatgagaaaaggtacaagatttgatttaagtaaccatctgaaaaattcatggaagatttatatacataca 40517287  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 49610868 - 49610791
Alignment:
Q  12 agagagaaagtgagaattggttgatgattgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataa 91  Q
    |||||||||||||||| | |  ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  49610868 agagagaaagtgagaaattg--gatgattgtctggttgaagagaaagggagaaaaatctagtattgagggagcatgataa 49610791  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 45064856 - 45064759
Alignment:
Q  12 agagagaaagtgagaa--ttggttgatgattgtgtggttgaagag----agagggagaaaaatctagtattgagggagtatgataaaagtgtattctt 103  Q
    |||||||||||||| |  |||||||||| ||||||||||||||||    ||||||||||||||  ||| ||||||||||||||||| ||| |||||||    
T  45064856 agagagaaagtgagtaatttggttgatgtttgtgtggttgaagagggagagagggagaaaaattgagtgttgagggagtatgataagagtatattctt 45064759  T

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Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 36936581 - 36936678
Alignment:
Q  12 agagagaaagtgagaattggttgatgattgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattcttcattga 109  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36936581 agagagaaagtgagaaatggttgatgattgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattctttattga 36936678  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 30272840 - 30272937
Alignment:
Q  12 agagagaaagtgagaattggttgatgattgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattcttcattga 109  Q
    |||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30272840 agagagaaagtgagaaatggttgatgattttgtgtttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattcttcattga 30272937  T

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Target: chr8; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 36936302 - 36936399
Alignment:
Q  12 agagagaaagtgagaattggttgatgattgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattcttcattga 109  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  36936302 agagagaaagtgagaaatggttgatgattgtgtggttgaagagagagggagaaaaatctagtattaagggagtatgataaaagtgtattctttattga 36936399  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 41092677 - 41092782
Alignment:
Q  12 agagagaaagtgagaa--ttggttgatgattgtgtggttgaagagagagg--------gagaaaaatctagtattgagggagtatgataaaagtgtattc 101  Q
    ||||||||||||||||  |||||||||| |||||||||||||||| ||||        |||||||||  ||| |||||||||||||||||||||||||||    
T  41092677 agagagaaagtgagaaatttggttgatgtttgtgtggttgaagagggagggagggagggagaaaaattgagtgttgagggagtatgataaaagtgtattc 41092776  T
Q  102 ttcatt 107  Q
    ||||||    
T  41092777 ttcatt 41092782  T

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Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 3619712 - 3619809
Alignment:
Q  12 agagagaaagtgagaattggttgatgattgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattcttcattga 109  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  3619712 agagagaaagtgagaaatggttgatgattttgtggttgaagagagagggagaaaaatctagtattgagaaagtatgataaaagtgtattcttcattga 3619809  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 109
Target Start/End: Original strand, 53290111 - 53290217
Alignment:
Q  12 agagagaaagtgagaat-tggttgatgattgtgtggttgaagagagagggaga--------aaaatctagtattgagggagtatgataaaagtgtattct 102  Q
    |||||||||||||||   |||||||||||||||||||||||||||||| ||||        |||||||||||| || |||||||||||||||||||||||    
T  53290111 agagagaaagtgagatcatggttgatgattgtgtggttgaagagagagagagagagagaaaaaaatctagtatcgaaggagtatgataaaagtgtattct 53290210  T
Q  103 tcattga 109  Q
    |||||||    
T  53290211 tcattga 53290217  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 52757975 - 52757898
Alignment:
Q  12 agagagaaagtgagaattggttgatgattgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataa 91  Q
    |||||||||||||||| | |  |||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||    
T  52757975 agagagaaagtgagaaattg--gatgattgtgtggttgaagagaaagggagaaaaatctaatattgagggagcatgataa 52757898  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 31634697 - 31634798
Alignment:
Q  12 agagagaaagtgagaa--ttggttgatgattgtgtggttgaagagagagg----gagaaaaatctagtattgagggagtatgataaaagtgtattcttca 105  Q
    ||||||||||||||||  |||||||||| |||||||||||||||| ||||    |||||||||  ||| ||||||||||||||||| ||| |||||||||    
T  31634697 agagagaaagtgagaaatttggttgatgtttgtgtggttgaagagggagggagggagaaaaattgagtgttgagggagtatgataagagtatattcttca 31634796  T
Q  106 tt 107  Q
    ||    
T  31634797 tt 31634798  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 25654862 - 25654793
Alignment:
Q  38 attgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattcttcatt 107  Q
    |||||| ||||||||||| |||||||| ||| |||||||||||||||||||||  | |||||||||||||    
T  25654862 attgtgaggttgaagagaaagggagaacaatatagtattgagggagtatgatatgactgtattcttcatt 25654793  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 11681184 - 11681253
Alignment:
Q  38 attgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattcttcatt 107  Q
    |||||| ||||||||||| |||||||| ||| |||||||||||||||||||||  | |||| ||||||||    
T  11681184 attgtgaggttgaagagaaagggagaacaatatagtattgagggagtatgatatgactgtactcttcatt 11681253  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 11689463 - 11689532
Alignment:
Q  38 attgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattcttcatt 107  Q
    |||||| ||||||||||| |||||||| ||| |||||||||||||||||||||  | |||| ||||||||    
T  11689463 attgtgaggttgaagagaaagggagaacaatatagtattgagggagtatgatatgactgtactcttcatt 11689532  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 12589425 - 12589356
Alignment:
Q  38 attgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattcttcatt 107  Q
    |||||| ||||||||||| | |||||| ||| |||||||||||||||||||||  | |||||||||||||    
T  12589425 attgtgaggttgaagagaaatggagaacaatatagtattgagggagtatgatatgaatgtattcttcatt 12589356  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 46765078 - 46765147
Alignment:
Q  38 attgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattcttcatt 107  Q
    |||||| ||||||||||| | |||||| ||| |||||||||||||||||||||  | |||||||||||||    
T  46765078 attgtgaggttgaagagaaatggagaacaatatagtattgagggagtatgatatgactgtattcttcatt 46765147  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 23383420 - 23383379
Alignment:
Q  66 aatctagtattgagggagtatgataaaagtgtattcttcatt 107  Q
    ||||||||||||| |||||||||||| ||||| |||||||||    
T  23383420 aatctagtattgatggagtatgataagagtgtgttcttcatt 23383379  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 156
Target Start/End: Original strand, 31634804 - 31634833
Alignment:
Q  127 taatggttaaaacttacttttccatgatgg 156  Q
    ||||||||||||||||||||||||||||||    
T  31634804 taatggttaaaacttacttttccatgatgg 31634833  T

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Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 16970915 - 16971012
Alignment:
Q  12 agagagaaagtgagaa--ttggttgatgattgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattcttcatt 107  Q
    ||||||||||||||||  |||||||||| |||||||||||||||| |||||||||||||  ||| ||||||||||||||||| |||||||||||||||    
T  16970915 agagagaaagtgagaaatttggttgatgtttgtgtggttgaagagggagggagaaaaattgagtgttgagggagtatgataagagtgtattcttcatt 16971012  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 8226804 - 8226727
Alignment:
Q  12 agagagaaagtgagaattggttgatgattgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataa 91  Q
    |||||||||||||||| | |  ||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||    
T  8226804 agagagaaagtgagaaattg--gatgattgtgtagttgaagagaaagggagaaaaatatagtattgagggagcatgataa 8226727  T

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Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 46721844 - 46721925
Alignment:
Q  12 agagagaaagtgagaattggttgatgattgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagt 95  Q
    |||||||||||||||| | |  |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  46721844 agagagaaagtgagaaattg--gatgattgtgtggttgaagagaaagggagaaaaatctagtattgagggagcatgataaaagt 46721925  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 38742060 - 38742137
Alignment:
Q  12 agagagaaagtgagaattggttgatgattgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataa 91  Q
    |||||||||||||||| | |  |||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||    
T  38742060 agagagaaagtgagaaattg--gatgattgtgtggttgaagaaaaagggagaaaaatctagtattgagggagcatgataa 38742137  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 46740474 - 46740544
Alignment:
Q  37 gattgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattcttcatt 107  Q
    ||||||| ||||||||||| || |||||||||||| | ||||||||||||||||| ||||| || ||||||    
T  46740474 gattgtgaggttgaagagaaagcgagaaaaatctaatgttgagggagtatgataagagtgtgtttttcatt 46740544  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 29315189 - 29315290
Alignment:
Q  12 agagagaaagtgagaa--ttggttgatgattgtgtggttgaagagagagg----gagaaaaatctagtattgagggagtatgataaaagtgtattcttca 105  Q
    ||||||||||||||||  |||||||||| |||||||||||||||| ||||    |||||||||  ||| ||||||||||||||||| |||||||||||||    
T  29315189 agagagaaagtgagaaatttggttgatgtttgtgtggttgaagagggagggagggagaaaaattgagtgttgagggagtatgataagagtgtattcttca 29315288  T
Q  106 tt 107  Q
    ||    
T  29315289 tt 29315290  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 41224284 - 41224232
Alignment:
Q  12 agagagaaagtgagaa--ttggttgatgattgtgtggttgaagagagagggag 62  Q
    ||||||||||||||||  |||||||||| |||||||||||||||| |||||||    
T  41224284 agagagaaagtgagaaatttggttgatgtttgtgtggttgaagagggagggag 41224232  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 16427165 - 16427266
Alignment:
Q  12 agagagaaagtgagaa--ttggttgatgattgtgtggttgaagagagagg----gagaaaaatctagtattgagggagtatgataaaagtgtattcttca 105  Q
    ||||||||||||||||  |||||||||| |||||||||||||||| ||||    |||||||||  ||| ||||||||||||||||| ||| |||||||||    
T  16427165 agagagaaagtgagaaatttggttgatgtttgtgtggttgaagagggagggagggagaaaaattgagtgttgagggagtatgataagagtatattcttca 16427264  T
Q  106 tt 107  Q
    ||    
T  16427265 tt 16427266  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 40992813 - 40992914
Alignment:
Q  12 agagagaaagtgagaa--ttggttgatgattgtgtggttgaagagagagg----gagaaaaatctagtattgagggagtatgataaaagtgtattcttca 105  Q
    ||||||||||||||||  |||||||||| |||||||||||||||| ||||    |||||||||  ||| ||||||||||||||||| ||| |||||||||    
T  40992813 agagagaaagtgagaaatttggttgatgtttgtgtggttgaagagggagggagggagaaaaattgagtgttgagggagtatgataagagtatattcttca 40992912  T
Q  106 tt 107  Q
    ||    
T  40992913 tt 40992914  T

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Target: scaffold0180 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 22281 - 22211
Alignment:
Q  37 gattgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgataaaagtgtattcttcatt 107  Q
    ||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||| ||||| || ||||||    
T  22281 gattgtgaggttgaagagaaagggagaaaaatctaatgttgagggagtatgataagagtgtgtttttcatt 22211  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 10607532 - 10607487
Alignment:
Q  45 ggttgaagagagagggagaaaaatctagtattgagggagtatgata 90  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||    
T  10607532 ggttgaagagaaagggagaacaatatagtattgagggagtatgata 10607487  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 931751 - 931803
Alignment:
Q  38 attgtgtggttgaagagagagggagaaaaatctagtattgagggagtatgata 90  Q
    |||||| ||||||||||| ||||| || | | |||||||||||||||||||||    
T  931751 attgtgaggttgaagagaaagggataacagtatagtattgagggagtatgata 931803  T

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