View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_15 (Length: 549)
Name: NF11826_high_15
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 4 - 536
Target Start/End: Complemental strand, 43452392 - 43451860
Alignment:
| Q |
4 |
cgaagatgcaattatctcatcactgcttccaataatctgtcccagtagtagaactgcagctgttttgggatttaaacacatgttaaccaagtcttcctct |
103 |
Q |
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| T |
43452392 |
cgaagatgcaattatctcatcactgcttccaataatctgtccaagtagaagaactgcagctgttttgggatttaaacacatgttaaccaagtcttcctct |
43452293 |
T |
|
| Q |
104 |
ttcttattgaaaacggctatgagggactctactacggccatctcagtaagagtcacagtggatgggtttaggacatacagtagcacaacagcttctgtca |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43452292 |
ttcttattgaaaacggctatgagggactctactacggccatctcagtaagagtcacagtggatgggtttaggacatacaatagcacaacagcttctgtca |
43452193 |
T |
|
| Q |
204 |
accctttcttgaaaagagccattatacattcaacgtcggtatccacgcgtgttagagtctgaataacagaattgtctctagatcccatctcagccagaag |
303 |
Q |
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| T |
43452192 |
accctttcttgaaaagagccattatacattcaacgtcggtatccacgcgtgttagagtctgaataacagaattgtctctagatcccatctcagccagaag |
43452093 |
T |
|
| Q |
304 |
gaaaactgctgcctgaagaacctggggttcaacagaattgaaaagtatctccacaaacccattaataattggaggttttgatagcatgctgtggatatcc |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43452092 |
gaaaactgctgcctgaagaacctggggttcaacagaattgaaaagtatctccacaaacccattaataattggaggttttgatagcatgctgtggatatcc |
43451993 |
T |
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| Q |
404 |
actcccagattccctcctctccacaacttctctatttgaagagccgccatttcagattcctggagaatctctgacatgtacaggttattgattgcacagc |
503 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43451992 |
actcccagattccctcctctccacaatttctctatttgaagagccgccatttcagattcctggagaatctctgacatgtacaggttattgattgcacagc |
43451893 |
T |
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| Q |
504 |
gtaactcgccaatcatcccatcaacagtggcct |
536 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
43451892 |
gtaactcgccaatcatcccatcaacagtggcct |
43451860 |
T |
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