View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_16 (Length: 548)
Name: NF11826_high_16
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 230 - 532
Target Start/End: Complemental strand, 6486616 - 6486314
Alignment:
| Q |
230 |
gttcgatgacccttagctcactagacgagctatttggattctttgcatgaacatggtgcagttcgctgcagaaccatttgatgtaaactgaatttgagtt |
329 |
Q |
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| T |
6486616 |
gttcgatgacccttagctcactagacgagctatttggattctttgcatgtacatggtgcagttcgctgcagaaccgtttgatgtaaactgaatttgagtt |
6486517 |
T |
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| Q |
330 |
cacaaacggctctgcaatgtgctgcaccatacagagaatccaaatctaaataaaatgttattgtatcctaaaattaatcgttgctaacttataattaatt |
429 |
Q |
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| T |
6486516 |
cacaaacggctctgcaatgtgctgcaccatacagagaatccaaatctaaataaaatgttattgtatcctaaaattaatcgttgctaacttataattaatt |
6486417 |
T |
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| Q |
430 |
tgaaatttggaattcagattaagtggtgagggctcaccaatgatgatgtcaccatggaatcaaacaacaaattcaccattctcaaagccacaatggtcac |
529 |
Q |
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| T |
6486416 |
tgaaatttggaattcagattaagtggtgagggctcaccaatgatgatgtcaccatggaatcaaacaacaaattcaccattctcaaagccacaatggtcac |
6486317 |
T |
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| Q |
530 |
aac |
532 |
Q |
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||| |
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| T |
6486316 |
aac |
6486314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 6486846 - 6486678
Alignment:
| Q |
1 |
agcaatggcagcagcaacaacaataataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcctatactgacgatgact |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6486846 |
agcaatggcagcagcaacaacaacaataacattcctcgtccacagtttatgcaatccgaaccccgattttccacaacagaagcctatactgacgatgact |
6486747 |
T |
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| Q |
101 |
atgccatgcgtagcagcagcgccgcctcccccatgagcccttactactacgaccctggaaggtctctcc |
169 |
Q |
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| T |
6486746 |
atgccatgcgtagcagcagcgccgcctcccccatgagcccttactactacgaccctggaaggtctctcc |
6486678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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