View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_18 (Length: 538)
Name: NF11826_high_18
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 8 - 521
Target Start/End: Original strand, 41656862 - 41657393
Alignment:
| Q |
8 |
agaagcaaaggaagagaaagaacttttgttgaaggaacgattgagaacagagatacctcttccaagggtatctatccccttatataaaagactacacc-- |
105 |
Q |
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| T |
41656862 |
agaaacaaaggaagagaaagaacttttgctgaaggaacgattgagaacagagatacctcttccaagggtatctatccccttatataaaagactacaccac |
41656961 |
T |
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| Q |
106 |
-tttcacacaaagaataaaaaatttatgcatggtatccccctcaaaaagcctaaactatcctcttactaaccgtctaattttccctaaccaatttcccat |
204 |
Q |
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| T |
41656962 |
ctttcacacaaaaaataaaaaatttatgcatggtatccccctcaaaaagcctaaactatcctcttactaactgtttaattttccctaaccaatttcccat |
41657061 |
T |
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| Q |
205 |
ctctataaaccaccaacgttatttctgtgctattta-----ttccaaccactcagcagctagtatgaaaggattatccaga------agtccagacctaa |
293 |
Q |
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| T |
41657062 |
ctctataaaccgccaacgttatttgtgtgctatttaatttattccaaccactcagcagctagtatgaaaggattatccagatccagaagtccagacctaa |
41657161 |
T |
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| Q |
294 |
ctttgaccttattgtatgcaagttaggcatgtttggaatccatcaattaaatgtcacca----accatacataacatataagtatctcagatcacagcag |
389 |
Q |
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| T |
41657162 |
ctttgaccttattgtatgcaagttaggcatgtttggaatccatcaattaaatgtcaccaaccaaccatacataacatataagtttctcagatcacagcag |
41657261 |
T |
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| Q |
390 |
aagtagaaacatatcatatcacatatcgatcacatttaacgtacttagaaagacaaccacatcgcagtcaaccatagttcaaaactgagcacggtaacag |
489 |
Q |
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| T |
41657262 |
aagtagaaacatatcatatcacatatcgatcacatttaacgtacttagaaagacaaccacatcgcagtcaaccatagttcaaaactgagcacggtaacag |
41657361 |
T |
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| Q |
490 |
aaattgctaggtctaaggcctctgcaattagg |
521 |
Q |
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| T |
41657362 |
aaattgctagttctaaggcctctgcaattagg |
41657393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 365 - 450
Target Start/End: Original strand, 41658382 - 41658467
Alignment:
| Q |
365 |
atataagtatctcagatcacagcagaagtagaaacatatcatatcacatatcgatcacatttaacgtacttagaaagacaaccaca |
450 |
Q |
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| T |
41658382 |
atataagtatcacagatcaaagcagaagtagaaatatatcatatcacatatcaatcatattttacatacattgaaagacaaccaca |
41658467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 41658506 - 41658567
Alignment:
| Q |
453 |
gcagtcaaccatagttcaaaactgagcacggtaacagaaattgctaggtctaaggcctctgc |
514 |
Q |
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| T |
41658506 |
gcagtcaaccataattcagagctgaggtatgtagcagaaattgctaggtctaaggcctctgc |
41658567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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