View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_25 (Length: 425)
Name: NF11826_high_25
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 9 - 410
Target Start/End: Complemental strand, 3710801 - 3710400
Alignment:
| Q |
9 |
acgttggaccgaaagtgtgttgtatctctacgacctttggggtcccccttcaatgtattagtgtaattgagggagtcaaatgatggctcatagcaggacc |
108 |
Q |
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| T |
3710801 |
acgttggaccgaaagtgtgttgtatctctacgacctttggggtccctcttcaatgtattagtgtagttgagggagtcaaatgatggctcatagcaggacc |
3710702 |
T |
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| Q |
109 |
aagtctttgaaataaaagcatgttgtatatgtgccctttgggtccagtatccttgataatgaaaagattcgttcttggaggccttagggggtcgaatgtt |
208 |
Q |
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| T |
3710701 |
aagtctttgaaataaaagcatgttgtatatgtgccctttgggtccagtatccttgataatgaaaaaattcgttcttggaggccttagggggtcaaacgtt |
3710602 |
T |
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| Q |
209 |
gactaagaagagaggtagattgttaatttatgtagatctaaccttattgttgcgtgtcaatgattccaaaaaacgggtactacacatcttcttgataaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3710601 |
gactaagaagagaggtagattgttaatttatgtagatctaaccttattgttgcgtgtcaatgattccaaaaaacgggtactacacatcttcttgataaaa |
3710502 |
T |
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| Q |
309 |
ttgtctgaaatgccttctaggtcgaattgtaggggtcggatggtccgaataccatttttgtgggtcgttgatagagtttattcttgggaacacgctcgaa |
408 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3710501 |
ttgtctgaaatgccttctaggtcgacttgtaggggtcggatggtccgaataccatttttgtgggtcgttgatagagtttattcttgggaacacgctcgaa |
3710402 |
T |
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| Q |
409 |
tg |
410 |
Q |
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| T |
3710401 |
tg |
3710400 |
T |
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