View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_29 (Length: 331)
Name: NF11826_high_29
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 6753032 - 6753346
Alignment:
| Q |
1 |
gattgtgcaatttctgaagctcgtggacactctggagggatatggatattaaaatctcaaaattgcacatatgatattgagattatagataactattttc |
100 |
Q |
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| T |
6753032 |
gattgtgcaatttctgaagctcgtggacactctggagggatatggatattaaaatctcaaaattgcacatatgatattgagattatagataactattttc |
6753131 |
T |
|
| Q |
101 |
aatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaactatttatgctagccctcaggttacaaatcgtgaccatctttggtccta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6753132 |
aatctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaactatttatgctagccctcaggttacaaatcgtgaccatctttggcccta |
6753231 |
T |
|
| Q |
201 |
cttgaattccttacgacctcatcttaatggcccttggcttcttatgggtgatttcaatgaaattcttcttccttcagaagtgcgtggaggagagtattcg |
300 |
Q |
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| T |
6753232 |
cttgaattccttacgacctcatcttaatggcccttggcttcttatgggtgatttcaatgaaattcttcttccttcagaagtgcgtggaggagagtattca |
6753331 |
T |
|
| Q |
301 |
ctatcaggtgctact |
315 |
Q |
| |
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||||||||||||||| |
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| T |
6753332 |
ctatcaggtgctact |
6753346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 2 - 315
Target Start/End: Complemental strand, 1811501 - 1811188
Alignment:
| Q |
2 |
attgtgcaatttctgaagctcgtggacactctggagggatatggatattaaaatctcaaaattgcacatatgatattgagattatagataactattttca |
101 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1811501 |
attgtgcaatttctgaagctcgtggacactctggaggtatatggatattaaaatctcaaaattgcacatatgatattgagattatagataactattttca |
1811402 |
T |
|
| Q |
102 |
atctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaactatttatgctagccctcaggttacaaatcgtgaccatctttggtcctac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1811401 |
atctatcactatagctctagaaaaggatagagtaaggtggtacttgtcaactatttatgctagccctcaggttacaaatcgtgatcatctttggtcctat |
1811302 |
T |
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| Q |
202 |
ttgaattccttacgacctcatcttaatggcccttggcttcttatgggtgatttcaatgaaattcttcttccttcagaagtgcgtggaggagagtattcgc |
301 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
1811301 |
ttgaattgcttacgacctcatcttaatggtccttggcttcttatgagtgatttcaatgaaattcttcttccttcagaagtacgtggaggagagtattcac |
1811202 |
T |
|
| Q |
302 |
tatcaggtgctact |
315 |
Q |
| |
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|||||||||||||| |
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|
| T |
1811201 |
tatcaggtgctact |
1811188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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