View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_30 (Length: 331)
Name: NF11826_high_30
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 2839214 - 2839518
Alignment:
| Q |
16 |
cattttcatgccaaatccagatcaataaaatttaaaagactaaccttagttgatatcatcttcaccacaaagctgatgtatttgtttatacgcctcagca |
115 |
Q |
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| T |
2839214 |
cattttcatgccaaatccagatcaataaaatttaaaagactaaccttagttgatatcatcttcaccacaaagctgatgtatttgtttatacgcctcagca |
2839313 |
T |
|
| Q |
116 |
gcttcttcataattttggcagtcagcgcatttacaacaattccaatttgctaattaagcactactgcatcattattattggttttggtagcatattagtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2839314 |
gcttcttcataattttggcagtcagcgcatttacaacaattccaatttgctaattaagcactactgcatcattattattggttttggtagcatattagtt |
2839413 |
T |
|
| Q |
216 |
tagcgcatttatatcgatagctttcatattttatgttaattgtatgtatagactgggtttgtgtgttcgtttttggaaattgannnnnnncttgtctcca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2839414 |
tagcgcatttatatcgatagctttcatattttatgttaattgtatgtatagactgggtttgtgtgttcgtttttggaaattgatttttttcttgtctcca |
2839513 |
T |
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| Q |
316 |
ttctt |
320 |
Q |
| |
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||||| |
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| T |
2839514 |
ttctt |
2839518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 150 - 298
Target Start/End: Complemental strand, 18297270 - 18297116
Alignment:
| Q |
150 |
aacaattccaatttgctaattaagcactactgcatcattattat------tggttttggtagcatattagtttagcgcatttatatcgatagctttcata |
243 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18297270 |
aacaattccaatttgctaattaagcactcctgcatcattattataattatttgttttggtagcatattagtttagcgcatttatattgatagctttcata |
18297171 |
T |
|
| Q |
244 |
ttttatgttaattgtatgtatagactgggtttgtgtgttcgtttttggaaattga |
298 |
Q |
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||||| || |||||||||||| |||||| ||||||||||| |||||||||||||| |
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| T |
18297170 |
ttttacgtaaattgtatgtattgactggatttgtgtgttcatttttggaaattga |
18297116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 11689689 - 11689539
Alignment:
| Q |
16 |
cattttcatgccaaatccagatcaataaaatttaaaagactaaccttagttgatatcatcttcaccacaaagctgatgtatttgtttatacgcctcagca |
115 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||||| || | | | | || ||||||||||||||||| ||| |||||| || |
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| T |
11689689 |
cattttcataccaaatccagatcaagaaaatttaaaagactaaccttagctgct-gcttttagtgcatcaagctgatgtatttgttcatatgcctcaaca |
11689591 |
T |
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| Q |
116 |
gcttcttcataattttggcagtcagcgcatttacaacaattccaatttgctaatt |
170 |
Q |
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|||||||||||||||||| |||||||||||| ||| ||||||||| ||||| |
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| T |
11689590 |
---acttcataattttggcagttagcgcatttacatcaaatccaatttggtaatt |
11689539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 30688287 - 30688225
Alignment:
| Q |
70 |
atcatcttcaccacaaagctgatgtatttgtttatacgcctcagcagcttcttcataattttg |
132 |
Q |
| |
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||||||||||| |||||| ||||||||||||| ||| ||||||||||||| || ||||||||| |
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| T |
30688287 |
atcatcttcacgacaaagttgatgtatttgttcatatgcctcagcagctttttgataattttg |
30688225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 28477919 - 28477979
Alignment:
| Q |
72 |
catcttcaccacaaagctgatgtatttgtttatacgcctcagcagcttcttcataattttg |
132 |
Q |
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||||||||| |||||| |||| || ||||| ||| ||||||||||||| || ||||||||| |
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| T |
28477919 |
catcttcacgacaaagttgatatacttgttcatatgcctcagcagctttttgataattttg |
28477979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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