View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_31 (Length: 331)
Name: NF11826_high_31
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 8956957 - 8957257
Alignment:
| Q |
17 |
actttggcaacgacgtaattgttggtttaatcgacaccggaatttggcccgaaagcgaaagctttaaagataatttaatgtccgaaattccttcaaaatg |
116 |
Q |
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| T |
8956957 |
actttggcaacgacgtaattgttggtttaatcgacaccggaatttggcccgaaagcgaaagctttaaagataatttaatgtccgaaattccttcaaaatg |
8957056 |
T |
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| Q |
117 |
gaatggacagtgtgaaaatagcattcttttcaattcatctctttgcaacaagaaactcattggtgccaaattcttcaaccaaggattgcaatccaaatat |
216 |
Q |
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| T |
8957057 |
gaatggacagtgtgaaaatagcattcttttcaattcatctctttgcaacaagaaactcattggtgccaaattcttcaacaaaggattgcaatccaaatat |
8957156 |
T |
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| Q |
217 |
ccaaacataaccttaggtttaaactccactcgtgattcacatggtcatgggactcacacttcatcaacagcagctggaaacagagttgatgatgcttcat |
316 |
Q |
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| T |
8957157 |
ccaaacataaccttaggtttaaactccactcgtgattcacatggtcatgggactcacacttcatcaacagcagctggaaacagagttgatgatgcttcat |
8957256 |
T |
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| Q |
317 |
t |
317 |
Q |
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| T |
8957257 |
t |
8957257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 319
Target Start/End: Original strand, 8973488 - 8973663
Alignment:
| Q |
147 |
caattcatctctttgcaacaagaaactcattggtgccaaattcttcaaccaaggattgcaatccaaatatccaaacataac---cttaggtttaaactcc |
243 |
Q |
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| T |
8973488 |
caattcatctttttgcaacaagaaactcattggagctagattcttcaacaaagggtttttggcaaaatatccaaatctaactaacacaattttgaactcc |
8973587 |
T |
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| Q |
244 |
actcgtgattcacatggtcatgggactcacacttcatcaacagcagctggaaacagagttgatgatgcttcattct |
319 |
Q |
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| T |
8973588 |
acacgtgacacaaatggtcatgggacacacacttcaacaacagcagctgggaatcaagttgatggtgcatcattct |
8973663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 8962086 - 8962139
Alignment:
| Q |
147 |
caattcatctctttgcaacaagaaactcattggtgccaaattcttcaaccaagg |
200 |
Q |
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| T |
8962086 |
caattcatctttttgcaacaaaaaactcattggagcaagattcttcaacaaagg |
8962139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 16461831 - 16461867
Alignment:
| Q |
257 |
atggtcatgggactcacacttcatcaacagcagctgg |
293 |
Q |
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| T |
16461831 |
atggacatgggactcacactgcatcaacagcagctgg |
16461867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 32 - 319
Target Start/End: Complemental strand, 34963869 - 34963582
Alignment:
| Q |
32 |
taattgttggtttaatcgacaccggaatttggcccgaaagcgaaagctttaaagataatttaatgtccgaaattccttcaaaatggaatggacagtgtga |
131 |
Q |
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| T |
34963869 |
taattgtaggtgtgattgacacaggagtttggccagaaagtgagagcttcaaagatgatggaatgactaaaattccttcaaaatggaaaggacaatgtga |
34963770 |
T |
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| Q |
132 |
aaatagcattcttttcaattcatctctttgcaacaagaaactcattggtgccaaattcttcaaccaaggattgcaatccaaatatccaaacataacctta |
231 |
Q |
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| T |
34963769 |
aaatagcattcatttcaattcatctctttgcaacaagaaactcattggagctaaattcttcaacagaggattattagcaaaatatcctaacatcacctta |
34963670 |
T |
|
| Q |
232 |
ggtttaaactccactcgtgattcacatggtcatgggactcacacttcatcaacagcagctggaaacagagttgatgatgcttcattct |
319 |
Q |
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|| ||||||||||| ||||| || | |||||||| ||||| |||||| ||||||||||||||| ||||||||| |||| ||||||| |
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| T |
34963669 |
ggattaaactccacacgtgacacagaaggtcatggaactcatacttcaacaacagcagctggaagcagagttgaccatgcatcattct |
34963582 |
T |
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