View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_34 (Length: 314)
Name: NF11826_high_34
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 54593316 - 54593037
Alignment:
| Q |
17 |
ctgtgtgccaaacgaattgaaacgggaaactacctcgatatgttaaagttgggtggtgttaacaggaaactaacgcagagctatatatattcttctcatg |
116 |
Q |
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| T |
54593316 |
ctgtgtgccaaacgaattgaaacgggaaactgcctcgatatgttaaagttgggtggtgttaacaggaaactaacgcagagctatatatattcttctcatg |
54593217 |
T |
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| Q |
117 |
tttcacctatgtatatcatacacattatgttttggatcatatcaatgtaccaattaccaaacctattcaagtcacttttagtgccatttcatggttacta |
216 |
Q |
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| T |
54593216 |
tttcacctatgtatatcatgcacattatgttttggatcatatcaatgtaccaattaccaaacctattcaagtcacttttagtgccatttcatggttacta |
54593117 |
T |
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| Q |
217 |
atgtgtgagcttgtaaaatatatttagagaaggtttcgactaaaatcctagactagacaaagacactgcttttacaatca |
296 |
Q |
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| T |
54593116 |
atgtgtgagcttgtaaaatatatttagagaaggtttccactaaaatcctagactagacaaagacactgcttttacaatca |
54593037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 138 - 277
Target Start/End: Original strand, 37946033 - 37946163
Alignment:
| Q |
138 |
acattatgttttggatcatatcaatgtaccaattaccaaacctattcaagtcacttttagtgccatttcatggttactaatgtgtgagcttgtaaaatat |
237 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||| || |
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| T |
37946033 |
acattatgttttggatcatatcattgtaccag-------acctattcaagtcactttcagtgtcatttcatggttactca--tgtgagcttgtaaaacat |
37946123 |
T |
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| Q |
238 |
atttagagaaggtttcgactaaaatcctagactagacaaa |
277 |
Q |
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| T |
37946124 |
atacaggcagggtttctaccaaaatgctagactagacaaa |
37946163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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