View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_36 (Length: 298)
Name: NF11826_high_36
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 24 - 281
Target Start/End: Original strand, 40404741 - 40404995
Alignment:
| Q |
24 |
catttctcacagctttcaaccataaaactacttctcttgctgaatgtgtttgggtttggagccatgcttctatcaactctctacctttcaaagggagcaa |
123 |
Q |
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| T |
40404741 |
catttctcacagctttcaaccataaaactacttctcttgctgaatgtgtttgggtttggagccatgcttctatcaactctctacctttcaaagggagcaa |
40404840 |
T |
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| Q |
124 |
aacgtcttgctatcattggatggatttgccttgttttcaacataagtgtatttgctgcacctctcttcgtcattgtaagtattcttaatttattttttcc |
223 |
Q |
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| T |
40404841 |
aacgtcttgctatcattggatggatttgccttgttttcaacataagtgtatttgctgcacctctcttcgtcattgtaagtattcttaatttattttttcc |
40404940 |
T |
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| Q |
224 |
caattaaatgagcaaatgatgataattaaataaatattttttatgatgatttccttcc |
281 |
Q |
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| T |
40404941 |
caattaaatgagcaa---atgataattaaataaataatttttatgatgatttccttcc |
40404995 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 45318010 - 45318088
Alignment:
| Q |
112 |
caaagggagcaaaacgtcttgctatcattggatggatttgccttgttttcaacataagtgtatttgctgcacctctctt |
190 |
Q |
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| T |
45318010 |
caaagggatccaaacgtctttctattattggatggatatgtatggtttttaacatatgtgtatttgcttctcctctctt |
45318088 |
T |
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