View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_43 (Length: 279)
Name: NF11826_high_43
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 38884886 - 38884631
Alignment:
| Q |
19 |
acaacgaagtccaatgaattaacaatatatttacagcgatgagttgtattaattaataatttcaaatacgagctatgtcaaagatgaattatcgttatgg |
118 |
Q |
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| T |
38884886 |
acaatgaagtccaatgaattaacaatatatttacagcgatgggttgtattaattaataatttcaaatacgagctatgtcaaagatgaattatcgttatgg |
38884787 |
T |
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| Q |
119 |
aagatccattacccaagccttcagttccatcttcgaagataagttggagctagaatgtgcaaaaagccatggaaagtgtacatcaacgttctcatagctc |
218 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38884786 |
aagacccattacccgagccttcagttccatcttcgaagataagttggagctagaatgtgcaaaaagccatggaaagtgtacatcaacgttctcaatgctc |
38884687 |
T |
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| Q |
219 |
tatgcccaagaaaaatatgttcatgtctttgggcaggcagtaacacctttgcttct |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38884686 |
tatgcccaagaaaaatatgttcatgtctttgggcaggcagtaacacctttgtttct |
38884631 |
T |
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