View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11826_high_47 (Length: 262)
Name: NF11826_high_47
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_47 |
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| [»] scaffold0042 (2 HSPs) |
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| [»] scaffold0534 (1 HSPs) |
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| [»] scaffold0599 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 12634298 - 12634535
Alignment:
| Q |
18 |
gttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagccgct---acataataagcaattaggagactctttttgctcaatc |
114 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12634298 |
gttgttttagcccatgcaagtctctctagagacctctcgggctcaaatatgctagccgctgctacataataagcaattaggagactctttttgctcaatc |
12634397 |
T |
|
| Q |
115 |
caaacccttctagttctgattccatgtaccacctaacagatagatatttagttgcaaatattcaaatgttcattagttattgctttcattgagtgaagca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12634398 |
caaacccttctagttctgattccatgtaccacctaacagataaatatttagttgcaaatattcaaatgttcattagttattgctttcattgagtgaagca |
12634497 |
T |
|
| Q |
215 |
tgttagagagtgttatgtggttattactcttacctttg |
252 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
12634498 |
tgttagagagtgttatgtggttattactcttacctttg |
12634535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 37960403 - 37960171
Alignment:
| Q |
18 |
gttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagccgct---acataataagcaattaggagactctttttgctcaatc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||| ||||| | |||||| |||||||||||||| ||||||||||||||||| |||| |
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| T |
37960403 |
gttgttttagcccatgcaagtctctctagagacctctcaggctcaaatatgttggccgctgctacataataagcaatcaggagactctttttgcttaatc |
37960304 |
T |
|
| Q |
115 |
caaacccttctagttctgattccatgtaccacctaacagatagatatttagttgcaaatattcaaatgttcattagttattgctttcattgagtgaagca |
214 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | |||||| |||| ||||||||||| |||||||||||||| ||||||| ||||||||||||| |
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| T |
37960303 |
caaacccttcttgttctgattccatgtaccacctaatatatagatttttaattgcaaatattggaatgttcattagttgttgctttgattgagtgaagca |
37960204 |
T |
|
| Q |
215 |
tgttagagagtgttatgtggttattactcttacct |
249 |
Q |
| |
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|||| |||||||| | |||||||||||||||||| |
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| T |
37960203 |
tgtt--agagtgttctctggttattactcttacct |
37960171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 11236 - 11371
Alignment:
| Q |
18 |
gttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgct---agccgctacataataagcaattaggagactctttttgctcaatc |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| |||||| ||||||| ||| ||||||| |||||||| | | ||||| ||||||||||| |
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|
| T |
11236 |
gttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggcagctgctacatgataagcaaacaacatactctctttgctcaatc |
11335 |
T |
|
| Q |
115 |
caaacccttctagttctgattccatgtaccacctaa |
150 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
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|
| T |
11336 |
caaacccttctagttctgattccatttaccacctaa |
11371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 11384 - 11452
Alignment:
| Q |
184 |
tcattagttattgctttcattgagtgaagcatgttagagagtgttatgtggttattactcttacctttg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||| |||||||||| |
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| T |
11384 |
tcattagttattgctttcattgagtgaagcattttagagagtatttcgtggttactacccttacctttg |
11452 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 9203 - 9064
Alignment:
| Q |
18 |
gttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagcc---gctacataataagcaattaggagactctttttgctcaatc |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| |||||| ||||||| ||| |||||||||||||||| | | ||||| |||||||||| |
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|
| T |
9203 |
gttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggccgctgctacataataagcaaacaacatactctccttgctcaatc |
9104 |
T |
|
| Q |
115 |
caaacccttctagttc----tgattccatgtaccacctaa |
150 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
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| T |
9103 |
caaacccttctagttctgattgattccatgtaccacctaa |
9064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 17231226 - 17231087
Alignment:
| Q |
18 |
gttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagccgct---acataataagcaattaggagactctttttgctcaatc |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||| || ||| |||||| ||||| | |||||| ||||||||||||| | | ||||| ||||||||||| |
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|
| T |
17231226 |
gttgtttttgcccatgcaagtctctctagagacccctcaggctcaaatatgttggccgctgctacataataagcaaacaacatactctctttgctcaatc |
17231127 |
T |
|
| Q |
115 |
caaacccttctagttct----gattccatgtaccacctaa |
150 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17231126 |
caaacccttctagttctgattgattccatgtaccacctaa |
17231087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 31151367 - 31151424
Alignment:
| Q |
195 |
tgctttcattgagtgaagcatgttagagagtgttatgtggttattactcttacctttg |
252 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
31151367 |
tgctttcattgagtgaaacatgttagagagtgttatgtggtttttattcttacctttg |
31151424 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 28049948 - 28049809
Alignment:
| Q |
18 |
gttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagcc---gctacataataagcaattaggagactctttttgctcaatc |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| |||||| ||||||| ||| |||||||||||||||| | | ||||| |||||||||| |
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|
| T |
28049948 |
gttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggccgctgctacataataagcaaacaacatactctcattgctcaatc |
28049849 |
T |
|
| Q |
115 |
caaacccttctagttc----tgattccatgtaccacctaa |
150 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| |
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|
| T |
28049848 |
caaacccttatagttctgattgattccatgtaccacctaa |
28049809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 19851642 - 19851503
Alignment:
| Q |
18 |
gttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagccgct---acataataagcaattaggagactctttttgctcaatc |
114 |
Q |
| |
|
|||||||| || ||||||| ||||||||||| |||||| |||||| ||||||| |||||| ||||||||||||| | | ||||| ||||||||||| |
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|
| T |
19851642 |
gttgtttttgcacatgcaattctctctagagacctctcaggctcaaatatgctggccgctgctacataataagcaaacaacatactctctttgctcaatc |
19851543 |
T |
|
| Q |
115 |
caaacccttctagttct----gattccatgtaccacctaa |
150 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19851542 |
caaacccttctagttctgattgattccatgtaccacctaa |
19851503 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 3363 - 3228
Alignment:
| Q |
18 |
gttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagccgct---acataataagcaattaggagactctttttgctcaatc |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| |||||| ||||||| | |||| |||| |||||| | | | ||||| ||||||||||| |
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|
| T |
3363 |
gttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggtcgctgctacatgataagccaacaacatactctctttgctcaatc |
3264 |
T |
|
| Q |
115 |
caaacccttctagttctgattccatgtaccacctaa |
150 |
Q |
| |
|
||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
3263 |
caaacccttctagtttttattccatttaccacctaa |
3228 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 3215 - 3147
Alignment:
| Q |
184 |
tcattagttattgctttcattgagtgaagcatgttagagagtgttatgtggttattactcttacctttg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||| |||||||||| |
|
|
| T |
3215 |
tcattagttattgctttcattgagtgaagcattttagagagtatttcgtggttactacccttacctttg |
3147 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 11911669 - 11911534
Alignment:
| Q |
18 |
gttgttttagcccatgcaagtctctctagagtcctctcgggctcacatatgctagccgct---acataataagcaattaggagactctttttgctcaatc |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| |||||| ||||||| | |||| |||| |||||| | | | ||||| ||||||||||| |
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|
| T |
11911669 |
gttgtttttgcccatgcaagtctctctagagacctctcaggctcaaatatgctggtcgctgctacatgataagccaacaacatactctctttgctcaatc |
11911570 |
T |
|
| Q |
115 |
caaacccttctagttctgattccatgtaccacctaa |
150 |
Q |
| |
|
||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
11911569 |
caaacccttctagttttaattccatttaccacctaa |
11911534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 11911521 - 11911453
Alignment:
| Q |
184 |
tcattagttattgctttcattgagtgaagcatgttagagagtgttatgtggttattactcttacctttg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| |||||||||| |
|
|
| T |
11911521 |
tcattagttattgctttcattgagtgaagcatgttagagagtatttcgtggttactacccttacctttg |
11911453 |
T |
|
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