View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11826_high_48 (Length: 252)
Name: NF11826_high_48
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_48 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 52205937 - 52206166
Alignment:
| Q |
1 |
catttgtattgtcaaaataaaaagaagaagaaataaaacagaacattcattcgttctggacttaggcaagttaaaagctctgaccagtacatgtaatgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52205937 |
catttgtattgtcaaaataaaaagaagaagaaataaaacaaaacattcattcgttctggacttaggcaagttaaaagctctgaccagtacatgtaatgtg |
52206036 |
T |
|
| Q |
101 |
cccaaagacctaatgnnnnnnnaaggaaaatggtgagaacttggtggtgggggagaaaagaagtagaatgctgctggcggcggtgggggaggtggaatct |
200 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
52206037 |
cccagagacctaatgtttttttaaggaaaatggtgagaacttggtggtgggggagaaaagaagtagaatgctgctggcggcggcggtggaggtggaatct |
52206136 |
T |
|
| Q |
201 |
tacgatgcctgtgttttggaggaaggtgcg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
52206137 |
tacgatgcctgtgttttggaggaaggtgcg |
52206166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University