View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_high_5 (Length: 702)
Name: NF11826_high_5
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 84 - 389
Target Start/End: Original strand, 48691853 - 48692154
Alignment:
| Q |
84 |
ttctatctgagcttaaaatttccattgaactcctatatgtttcatgcatgcatgcatgcatacaccgagaatcttgaattagacatccattttgtttgtg |
183 |
Q |
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| T |
48691853 |
ttctatccgagcttaaaatttccattgaactcctatatgtttcatg----catgcatgcatacaccgagcatcttgaattagacatccattttgtttgtg |
48691948 |
T |
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| Q |
184 |
ggaagcagttgcaagaccaaaatgatttacttcta--ttttttagaactatatatatgtgacaatagttaaaagtgatatatgacacttttactaatcaa |
281 |
Q |
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| T |
48691949 |
ggaagcagttgcaagaccaaaatgatttacttctattttttttagaactatatatttatgacaatagttaaaa-tgatatatgacacttttactaatcaa |
48692047 |
T |
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| Q |
282 |
aatttctacgtcctatcttggaggagacaaaattgatttaaaaggagtaggattaatttttgacatgtttagttgttctcaaataaaattgattctcata |
381 |
Q |
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| T |
48692048 |
aatttctacgtcctatcttggaggagacaaaattgatttaaaaggagtaggattaa-ttttgacatgtttagttgttctcaaataaaattgattctcata |
48692146 |
T |
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| Q |
382 |
tttttctt |
389 |
Q |
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| T |
48692147 |
tttttctt |
48692154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 394 - 687
Target Start/End: Original strand, 48692194 - 48692477
Alignment:
| Q |
394 |
agaattgattctaatttgaagttagaagattgaagttttttgctctacaactaattttcagtattaaatttattaaccaactcatttaatatgaatttat |
493 |
Q |
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| T |
48692194 |
agaattgattctaatttgaagttagaagattgaagtttttggttctacaactaattttcagtattaaatttattaaccaactcatttaatatgaatttat |
48692293 |
T |
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| Q |
494 |
ttgaacctaaataactttatatttgaatcaattttacgtactcaatatattcaaaatcaaannnnnnnnnnnnnnnnnnataaacaatcattaatacaac |
593 |
Q |
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| T |
48692294 |
ttgaacctaaataactttatatttgaatcaattttacgcactcaatatattcaaaatcaa----------tttttttttataaacaatcattaatacaac |
48692383 |
T |
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| Q |
594 |
atgaatctaaaatcaaaggataattcagctttaattaatacaacaagaatctaaaatcgatggataattcagctttatgtgatgtggatgtatt |
687 |
Q |
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| T |
48692384 |
atgaatctaaaatcaaaggataattcagctttaattaatacaacaagaatctaaaatcgatggataattcagctttatgtgatgtggatgtatt |
48692477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 48691744 - 48691818
Alignment:
| Q |
1 |
ttttttatcattaaatataaatcctattttaaattagttagtcaataccacaactgaactcttacggattcaatccatt |
79 |
Q |
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| T |
48691744 |
ttttttatcattaaatataaatcctattttaaattag----tcaataccacaactgaactcttacggattcaatccatt |
48691818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 8330060 - 8330104
Alignment:
| Q |
333 |
attaatttttgacatgtttagttgttctcaaataaaattgattct |
377 |
Q |
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| T |
8330060 |
attaattttttacatgtttggttgctctcaagtaaaattgattct |
8330104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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