View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_12 (Length: 612)
Name: NF11826_low_12
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 73 - 593
Target Start/End: Complemental strand, 45520111 - 45519610
Alignment:
| Q |
73 |
ctaagaaaaatgaagaagaagatcatatatagctagcaaaggacggaagccaagtaatgttcatttgaaaactaatgatggagggggtgcagtttaaatc |
172 |
Q |
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| T |
45520111 |
ctaagaaaaatgaagaagaagatcatatatagctagcaaaggacggaagccaagtaatgttcatttgaaaacgaatgatggagggggtgcagtttaaatc |
45520012 |
T |
|
| Q |
173 |
taatactatatagaagatcgatgataacgacaccaaatgtcatcaatactacttgttaacgtcttcacgattcaagagtagctcatttaaattataccaa |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
45520011 |
taatactatatagaagatcgatgataacgacaccaaatgtcatcaatactacttgttaacgtcttcacgattcaagaggagttcatttaaattatacca- |
45519913 |
T |
|
| Q |
273 |
ctgatttgtacttgtagcatactaatt-aataacgttaattcattaataccattaaactattcagttcctcaatttttattaagctcattgttttcatag |
371 |
Q |
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| T |
45519912 |
-------------------tactaatttaataacgttaattcattaataccattaaactattcagttcctcaatttttattaagctcattgttttcatag |
45519832 |
T |
|
| Q |
372 |
ttttcagccaccaccattcatcaactctttgctacatttttggatacaaattcattggattctagcaccccaaaatatattcattgaactcttccctaat |
471 |
Q |
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| T |
45519831 |
ttttcagccaccaccattcatcaactctttgctacatttttggatacaaattcattggattctagcaccccaaaatatattcattgaactcttccctaat |
45519732 |
T |
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| Q |
472 |
tatatataggttcaataaataaataaaatctccgttttagggataaattactaatccttgcagaatttatgtgattaaagtataaatcttggtacgtcta |
571 |
Q |
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| T |
45519731 |
tatatataggttcaataaataaataaaatctccgttttagggataaattactaatccttgcagaatttatgtgattaaagtataaatcttggtacgtcta |
45519632 |
T |
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| Q |
572 |
aatggtgagtgtaattcggtta |
593 |
Q |
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| T |
45519631 |
aatggtgagtgtaattcggtta |
45519610 |
T |
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