View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_14 (Length: 601)
Name: NF11826_low_14
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 381 - 585
Target Start/End: Complemental strand, 17783300 - 17783096
Alignment:
| Q |
381 |
tagcaaatagtaaattagataaaaatccagttactttatttagcagcataaggagaataaagtattcatattcagtgcttctaaattcatgttccaataa |
480 |
Q |
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| T |
17783300 |
tagcaaatagtaaattacataaaaatccagttactttatttagcagcataaggagaataaagtattaatattcagtgcttctaaattcatgttccaataa |
17783201 |
T |
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| Q |
481 |
tgcttttcagtttggcaaccaacttctcatgaggaggaagtgtctccttcaccaggggatgttccttcaagttattcacccacatgaaaaatttcggcat |
580 |
Q |
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| T |
17783200 |
tgcttttcagtttggcaaccaacttctcatgaggaggaagtgtctccttcaccaggggatgttccttcaagttattcacccaaatgaaaaatttcggcat |
17783101 |
T |
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| Q |
581 |
ctttt |
585 |
Q |
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||||| |
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| T |
17783100 |
ctttt |
17783096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 149 - 299
Target Start/End: Complemental strand, 17783532 - 17783382
Alignment:
| Q |
149 |
caggaccacgctatagcaaatagannnnnnnnnnaacggcaaattttattaataaaagtctatgcacaagacgaccagggacgggtaagacagaaactac |
248 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17783532 |
caggaccacgctatagcaaatagattttttttttaaccgcaaattttattaataaaagtccatgcacaagacgaccagggacgggtaagacagaaactac |
17783433 |
T |
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| Q |
249 |
aagcaacggacgtcgtatataagtggaacctcaaaaggaaatgcatacacc |
299 |
Q |
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| T |
17783432 |
aagcaacggacgtcgtacataagtggaacctcaaaagaaaatgcatacacc |
17783382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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