View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_18 (Length: 538)
Name: NF11826_low_18
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_18 |
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| [»] scaffold0320 (1 HSPs) |
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Alignment Details
Target: scaffold0320 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Original strand, 17450 - 17963
Alignment:
| Q |
19 |
attcctccttttactcaactgttattggaattgtacagcatcaaatgcaaacaagcccttagttttatgctctgtagcatgggacccttagtctttcgat |
118 |
Q |
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| T |
17450 |
attcctccttttactcaactgttattggaattgtacagcatcaaatgcaaacaagcccttagttttatgctctgtagcatgggacccttagtctttcgat |
17549 |
T |
|
| Q |
119 |
gggagatgaatttttatttgttatatgttcaacatgtgtttttaaagcatgtaacaagttcaagcggtagccaagcgataggggagtcaaaaacttgatc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17550 |
gggagatgaatttttatttgttatatgttcaacatgtgtttttaaagcatgtaacaagttcaagctgtagccaagcgataggggagtcaaaaacttgatc |
17649 |
T |
|
| Q |
219 |
aatggttcacttaggatattgacagaagaactaattttagtgacaagactgtaatagcagtgacaaattgtccttgtgatatttgttctctggtttaacc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17650 |
aatggttcacttaggatattgacagaagaactaattttagtgacaagactgtaatagcagtgacaaattgtccttgtgatatttgttctctggtttaacc |
17749 |
T |
|
| Q |
319 |
tctgatatgcatattgttttcatcccatccatccaatactgagtatccgttacatggtagactttactgtgtcaataacacactttctttggtcttttcg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17750 |
tctgatatgcatattgttttcatcccatccatccaatactgagtatccgttacatggtagactttactgtgtcaata--acactttctttggtcttttcg |
17847 |
T |
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| Q |
419 |
tctcctgttaaatgcagattaatttcatgttttattaagggaattaactatttgcttgcatgttgaattggtgattgataattaattatcgttagcttga |
518 |
Q |
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| T |
17848 |
tctcctgttaaatgcacattaatttcatgttttattaagggaattaactatttgcttgcatgttgaattggtgattaataattaattatcgtaagcttga |
17947 |
T |
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| Q |
519 |
aatttcctatgcttct |
534 |
Q |
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| T |
17948 |
aatttcctgtgcttct |
17963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Original strand, 28122277 - 28122802
Alignment:
| Q |
19 |
attcctccttttactcaactgttattggaattgtacagcatcaaatgcaaacaagcccttagttttatgctctgtagc-atgggacccttagtctttcga |
117 |
Q |
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|||||||||||| || |||| | ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
28122277 |
attcctccttttgcttaactatcgttggaattgtacaacatctaatgcaaacaatcccttagttttatgctctgtagcgatgcaacccttagactttcga |
28122376 |
T |
|
| Q |
118 |
tgggagatgaatttttatttgttatatgttcaacatgtgtttttaaagcatgtaacaagttcaagcggtagcca-----------agcgataggggagtc |
206 |
Q |
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|||| ||||| |||||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
28122377 |
tgggggatgagtttttatttgttatgtgttcaacatatgtttttatagcatgtaacaagttcaagttgtagccattagaccaagaagctataggggagtc |
28122476 |
T |
|
| Q |
207 |
aaaaacttgatcaatggttcacttaggatattgacagaagaactaattttagtgacaagactgtaatagcagtgacaaattgtccttgtgatatttgttc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28122477 |
aaaaacttgatcaatggttcacttaggatattgacagaagaactaattttagtgacaagactgtaatagcagtgacaaattgtccttgtgatatttgttc |
28122576 |
T |
|
| Q |
307 |
tctggtttaacctctgatatgcatattgttttcatcccatccatccaatactgagtatccgttacatggtagactttactgtgtcaataacacactttct |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
28122577 |
tctggtttaacctctgatatgcatattgttttcatcccatccatccaatactgagtatccgttacatggtagactttactgtgtcaata--acactttct |
28122674 |
T |
|
| Q |
407 |
ttggtcttttcgtctcctgttaaatgcagattaatttcatgttttattaagggaattaactatttgcttgcatgttgaattggtgattgataattaatta |
506 |
Q |
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| T |
28122675 |
ttggtcttttcgtctcctgttaaatgcacattaatttcatgttttattaagggaattaactatttgcttgcatgttgaattggtgattaataattaatta |
28122774 |
T |
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| Q |
507 |
tcgttagcttgaaatttcctatgcttct |
534 |
Q |
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| T |
28122775 |
tcgttagcttgaaatttcctgtgcttct |
28122802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 28174149 - 28174185
Alignment:
| Q |
392 |
aataacacactttctttggtcttttcgtctcctgtta |
428 |
Q |
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| T |
28174149 |
aataacatactttctttggtctttttgtctcctgtta |
28174185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 34816346 - 34816385
Alignment:
| Q |
198 |
aggggagtcaaaaacttgatcaatggttcacttaggatat |
237 |
Q |
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| T |
34816346 |
aggggagtcaaaaacttgatcaatagttcaattaggatat |
34816385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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