View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_20 (Length: 526)
Name: NF11826_low_20
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 23 - 496
Target Start/End: Original strand, 23751234 - 23751713
Alignment:
| Q |
23 |
tagtttgctaaggagtgtttatgggagtagaaaatgtcattctcctttgtttgcatggaggggaagagaaagattatagtttttgagaaatttgagaggg |
122 |
Q |
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| T |
23751234 |
tagtttgctaaggagtgttcaagggagtagaaaatgtctttctcctttgtttgcatggaggggaagagaaagattatagtttttgagaaatttgagaggg |
23751333 |
T |
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| Q |
123 |
aagaaaaaatgataggcaattattgcattatcttc-aaaattgagaaattaattttgttagaatagtaacttgataccaaagacaaacgaaatgataata |
221 |
Q |
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| T |
23751334 |
aagaaaaaatgataggcaattgttgcattctcttccaaaattgagaaattgattttgttagaacagtaacttgataccgaagacaaacgaaatgataata |
23751433 |
T |
|
| Q |
222 |
cacaaacaatgaaacacaatgtttggtaatgaagttcgaccaaataggtctatctgactacaaaacaattatagtcatgtatt-----ctctaaataaaa |
316 |
Q |
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| T |
23751434 |
cacaaacaatgaaacacaatgtttggtattgaagttcaaccaaatatgtctatccgactacaaaacaattgtagtcatgtattattatctctaaataaaa |
23751533 |
T |
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| Q |
317 |
ttagggtttacgtgcttgagccatacctagcaaatttaaattttgtaaactaagtggactaaattatccttatctattttattttataattttaaaattg |
416 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
23751534 |
ttagggtttacgcacttgagccatacctagcaaatttaaattttgtaaactaagtggactaaattatcgttatctattttattttataatttaaaaattt |
23751633 |
T |
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| Q |
417 |
tccttgctaatcatatcataaacttctattaccatctcttcacataagccaactctatccttctccaaaggccatcatat |
496 |
Q |
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| T |
23751634 |
tccttgctaatcatatcataaacttctattaccatctcttcacataagccaactctatccttctccaaaggccatcatat |
23751713 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 8116653 - 8116601
Alignment:
| Q |
206 |
aaacgaaatgataatacacaaacaatgaaacacaatgtttggtaatgaagttc |
258 |
Q |
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|||||||||||||| ||||||||||||||| | || |||||||| ||||||| |
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| T |
8116653 |
aaacgaaatgataaaacacaaacaatgaaatgcgatatttggtaacgaagttc |
8116601 |
T |
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