View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_22 (Length: 472)
Name: NF11826_low_22
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_22 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0438 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 52188516 - 52188039
Alignment:
| Q |
1 |
taaaaagacaggtgtaaaatagaacaaaggtatcaaacaatctacttaaaatatgatactcaaatatctaagtctgcatgtgcctaaaattaaattttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52188516 |
taaaaagacaggtgtaaaatagaacaaaggtatcaaacaatctacttaaaatatgatactcaaatatctaagtctgcatgtgcctaaaattaaattttaa |
52188417 |
T |
|
| Q |
101 |
aaaatacatgattgaacaatctacttgatacnnnnnnnnnnnnn-gaaggaatctacttaatacttataaacttattacgacnnnnnnn-gtaaattagt |
198 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52188416 |
aaaatacatgattgaacaatctacttaatacttttttttttttttgaaggaatctacttaatacttataaacttattacgacttttttttgtaaattagt |
52188317 |
T |
|
| Q |
199 |
atcagtgaagcttctatgaagtgaatgactaaaattactggtccaacatgtgatttaagatgtacaatcaagnnnnnnncacaagtagcaactcaagttc |
298 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52188316 |
atcagtgaagctcctatgaagtgaatgactaaaattactggtccaacatgtgatttaagatgtacaatcaagtttttttcacaagtagcaactcaagttc |
52188217 |
T |
|
| Q |
299 |
atatcagttgtgaatattctatgagctagaagttaattcaaacgagttgtacaagttattcaagatgcacatgtcaactgcat----tgcacacaaacat |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||||| |
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| T |
52188216 |
atatcagttgtgaatattctatgagctagaagttaattcaaactagttgtacaagtgattcaagatgcacacgtcaactgcatacattgcacacaaacat |
52188117 |
T |
|
| Q |
395 |
ttgttgcactaaaagggttttgtaatgtatcccctgaaactaagttattataaccagagacatcgtgggaagtagaaa |
472 |
Q |
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|
| T |
52188116 |
ttgttgcactaaaagggttttgtaatgtatcccctgaaactaagttattataaccagagacatcgtgggaagtagaaa |
52188039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 237 - 465
Target Start/End: Complemental strand, 38990538 - 38990298
Alignment:
| Q |
237 |
tggtccaacatgtgatttaagatgtacaatcaagnnnnnnncacaagtagcaactcaagttcatatcagttgtg-----aatattctatgagctagaagt |
331 |
Q |
| |
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||||||||||| ||||| |||||||||||||||| ||||| |||||||||||||||||||| || ||| |||||||||| | |||||||| |
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| T |
38990538 |
tggtccaacatatgattcaagatgtacaatcaagtttttttcacaactagcaactcaagttcatatctgtagtgtagtcaatattctataaactagaagt |
38990439 |
T |
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| Q |
332 |
taattcaaacgagttgtacaagttattcaagatgcacatgtcaac-----tgcattgcacacaaacatttgttgcactaaa--agggttttgtaatgtat |
424 |
Q |
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| T |
38990438 |
taattcaaactagttgtacaagtgattcaagatgcacaagtcaacatgcatacattgtacacaaacatttgttgcactaaataagggttttgtaatgtat |
38990339 |
T |
|
| Q |
425 |
cccctgaaactaagttattataaccagagacatcgtgggaa |
465 |
Q |
| |
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| |||||| |||||||||||||||||||||||||||||| |
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| T |
38990338 |
tctctgaaataaagttattataaccagagacatcgtgggaa |
38990298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 369
Target Start/End: Original strand, 27700269 - 27700329
Alignment:
| Q |
309 |
tgaatattctatgagctagaagttaattcaaacgagttgtacaagttattcaagatgcaca |
369 |
Q |
| |
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||||||||||||||||||||||||||| || || ||| ||||| || |||||||||||||| |
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| T |
27700269 |
tgaatattctatgagctagaagttaatccagactagtagtacatgtgattcaagatgcaca |
27700329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 26292334 - 26292294
Alignment:
| Q |
336 |
tcaaacgagttgtacaagttattcaagatgcacatgtcaac |
376 |
Q |
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|||||| ||||||||| || ||||||||||||||||||||| |
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| T |
26292334 |
tcaaactagttgtacatgtgattcaagatgcacatgtcaac |
26292294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 26305591 - 26305551
Alignment:
| Q |
336 |
tcaaacgagttgtacaagttattcaagatgcacatgtcaac |
376 |
Q |
| |
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|||||| ||||||||| || ||||||||||||||||||||| |
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| T |
26305591 |
tcaaactagttgtacatgtgattcaagatgcacatgtcaac |
26305551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 26338946 - 26338906
Alignment:
| Q |
336 |
tcaaacgagttgtacaagttattcaagatgcacatgtcaac |
376 |
Q |
| |
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|||||| ||||||||| || ||||||||||||||||||||| |
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| T |
26338946 |
tcaaactagttgtacatgtgattcaagatgcacatgtcaac |
26338906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 5359902 - 5359963
Alignment:
| Q |
308 |
gtgaatattctatgagctagaagttaattcaaacgagttgtacaagttattcaagatgcaca |
369 |
Q |
| |
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||||| || |||||||||||||||||||||||| |||||||| || ||||||| |||||| |
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|
| T |
5359902 |
gtgaaaatcctatgagctagaagttaattcaaattagttgtacgtgtgattcaaggtgcaca |
5359963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 376
Target Start/End: Complemental strand, 6716 - 6676
Alignment:
| Q |
336 |
tcaaacgagttgtacaagttattcaagatgcacatgtcaac |
376 |
Q |
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|||||| ||||||||| || ||||||||||||||||||||| |
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| T |
6716 |
tcaaactagttgtacatgtgattcaagatgcacatgtcaac |
6676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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