View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_23 (Length: 470)
Name: NF11826_low_23
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 54980509 - 54980963
Alignment:
| Q |
1 |
aaatgaatcatgcataaatatacacataaaagataaagaaaaagataaggtaagtatatcacgattttctgaaaaatggaagagtgggttcatatatcta |
100 |
Q |
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| T |
54980509 |
aaatgaatcatgcataaatatacacataaaagataaagaaaaagataaggtaagtatatcacgattttctgaaaaatggaagagtgggttcatatatcta |
54980608 |
T |
|
| Q |
101 |
tatataagataaagataacttgatcagtctcaagaaaaatggaagtgttggtagagaaaaaaggttttagatcagtgcaagagctggcattgaattctga |
200 |
Q |
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| T |
54980609 |
tatataagataaagataacttgatcagtctcaagaaaaatggaagtgttggtagagaaaaaaggttttagatcagtgcaagagctggcattgaattctga |
54980708 |
T |
|
| Q |
201 |
aaatgtgactccaaatgagtatatctacgaggatggtgttgaactttatgatgctcttcctttttcagaatcaaatcttcatattacagtcgttgacatt |
300 |
Q |
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| T |
54980709 |
aaatgtgactccagatgagtatatctacgaggatggtgttgaactttatgatgctcttcctttttcagaatcaaatcttcatattacagtcgttgacatt |
54980808 |
T |
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| Q |
301 |
gccaacctcacatctccatctacggcaatagcacagcaggagcttcagaaactccaatctgcactcgactcttgtggcttcttcatggtctcattttcat |
400 |
Q |
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| T |
54980809 |
gccaacctcacatctccatctacggcaatagcacagcaggagcttcagaaactccaatctgcactcgactcttgtggcttcttcatggtctcattttcat |
54980908 |
T |
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| Q |
401 |
tatttatttatgcatgcatgcatgccatgttgcttaca-ttttttataagaattt |
454 |
Q |
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| T |
54980909 |
tatttatttatgcatgcatgcatgccatgttgcttacatttttttataagaattt |
54980963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 54961583 - 54961657
Alignment:
| Q |
249 |
tgatgctcttcctttttcagaatcaaatcttcatattacagtcgttgacattgccaacctcacatctccatctac |
323 |
Q |
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| T |
54961583 |
tgatgctcttcttccttcacaatcagatcttcatattccagttgttgacattggcaaactcatttctccatctac |
54961657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 54980479 - 54980508
Alignment:
| Q |
24 |
acataaaagataaagaaaaagataaggtaa |
53 |
Q |
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| T |
54980479 |
acataaaagataaagaaaaagataaggtaa |
54980508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 404
Target Start/End: Complemental strand, 31322763 - 31322533
Alignment:
| Q |
171 |
atcagtgcaagagctggcattgaattctgaaaatgtgactccaaatgagtatatctacgagga---tggtgttgaactttatgatgctcttcctttttca |
267 |
Q |
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|||||| |||||| |||||||||||| ||||||| | | |||||| | ||||| ||| | || |||||||| | || ||||||||||| | |||| |
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| T |
31322763 |
atcagttcaagagttggcattgaattttgaaaatcttccaccaaataattatatatacaatgaaggtggtgttggatttcgtgatgctcttcttccttca |
31322664 |
T |
|
| Q |
268 |
gaatcaaatcttcatattacagtcgttgacattgccaacctcacatctccatctacggcaatagcacagcaggagcttcagaaactccaatctgcactcg |
367 |
Q |
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| T |
31322663 |
gaatcagattttcatgttccaattattgacattgccaacctcacttctccatctac------atcacaacatgagcttcataaactccaatctgcacttc |
31322570 |
T |
|
| Q |
368 |
actcttgtggcttcttcatggtctcattttcattatt |
404 |
Q |
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| T |
31322569 |
attcatgtggcttctttctggtctcattttcattatt |
31322533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 365
Target Start/End: Complemental strand, 31333034 - 31332924
Alignment:
| Q |
249 |
tgatgctcttcctttttcagaatcaaatcttcatattacagtcgttgacattgccaacctcacatctccatctacggcaatagcacagcaggagcttcag |
348 |
Q |
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| T |
31333034 |
tgatgctcttcttccttcagaatcagattttcatgttccaatcattgacattgccaacctcacttctccatctac------agcacaacatgagcttcat |
31332941 |
T |
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| Q |
349 |
aaactccaatctgcact |
365 |
Q |
| |
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||||||||||||||||| |
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| T |
31332940 |
aaactccaatctgcact |
31332924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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