View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_24 (Length: 450)
Name: NF11826_low_24
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 7 - 447
Target Start/End: Complemental strand, 42622754 - 42622314
Alignment:
| Q |
7 |
gtatggaagcttgggtgacaatggaaatgcataatatagcttacttggaaaatgatagggagtttctcaaatttgctttgcctaatccttgtgttacaaa |
106 |
Q |
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| T |
42622754 |
gtatggaagcttgggtgacaatggaaatgcataatatagcttacttggaaaatgatagggagtttctcaaatttgctttgcctaatccttgtgttacaaa |
42622655 |
T |
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| Q |
107 |
catttagtttataatatatgcgaatgaatgaattagtggatgttttgttttgagaaatgattgaaattacacagctcgagaggaactaatattcctcaac |
206 |
Q |
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| T |
42622654 |
catttagtttataatatatgcgaatgaatgaattagtggatgttttgttttgagaaatgattgaaattacatagctcgataggaactaatattcctcaac |
42622555 |
T |
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| Q |
207 |
tactagcattgaatatcaacacattgcatacccttcggaaagtaagtgtttgaaagttgaggtttaatttctttttggttgttaatgttttgagttagct |
306 |
Q |
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| T |
42622554 |
tactagcattgaatatcaacacattgcataaccttcggaaagtaagtgtttgaaagttgaggtttaatttctttttggttgttaatgttttgagttagtt |
42622455 |
T |
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| Q |
307 |
gtatgaaaatttactgatttttgaaaagagtagtaatacttgaacaatcaaaatgcaacaacttttggaatatcatataaaaataagcgtaaagcaagtg |
406 |
Q |
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| T |
42622454 |
gtatgaaaatttaccgatttttgaaaagagtagtaatacttgaacaatcaaaatgcaacaacttttggaatatcatataaaaataagcgtaaagcaagtg |
42622355 |
T |
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| Q |
407 |
ttaatttgattaagacagagagatagaaaatatcgttgatg |
447 |
Q |
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| T |
42622354 |
ttaatttgattaagacagagagatagaaaatatcgttgatg |
42622314 |
T |
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