View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_27 (Length: 397)
Name: NF11826_low_27
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 30 - 378
Target Start/End: Original strand, 23694176 - 23694524
Alignment:
| Q |
30 |
agcaaccaccaaaaccaaatcgacaaaaacatgtgaaaatcacctttgtcttcaacacatattgttgagtttcttttcattcttttcatcctggggacat |
129 |
Q |
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| T |
23694176 |
agcaaccaccaaaaccaaatcgacaaaaacatgtgaaaatcacccttgtcttcaacacatattgttgagtttcttttcattcttttcatcctggggacat |
23694275 |
T |
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| Q |
130 |
ggagggaacttcaccatcctctacagcagatgatttctacttctcagccattcatgataaagaaatttttcgaatatctgaagagacatatgcagaggaa |
229 |
Q |
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| T |
23694276 |
ggagggaacttcaccatcctctacagcagatgatttctacttctcagccattcatgataaagaaatttttcgaatatctgaagagacatatgcagaggaa |
23694375 |
T |
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| Q |
230 |
ttacaaatacaagaagcattattattttccactcttttgtcaaatactattatagatgtaaaaaatgaaatccaagtagtggatgcaaaagttgatctca |
329 |
Q |
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| T |
23694376 |
ttacaaatacaagaagcattattattttccactcttatgtcaaatactactatagatgtaaaaaatgaaatccaagtagtggatgcaaaagttgatctca |
23694475 |
T |
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| Q |
330 |
aacagaagcagaaagaggcttttgtaggtgaatcttcttcgtcgtcttc |
378 |
Q |
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| T |
23694476 |
aacagaagcagaaagaggcttttgtaggtgaatcttcttcgtcttcttc |
23694524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 181 - 373
Target Start/End: Complemental strand, 23701488 - 23701296
Alignment:
| Q |
181 |
tcatgataaagaaatttttcgaatatctgaagagacatatgcagaggaattacaaatacaagaagcattattattttccactcttttgtcaaatactatt |
280 |
Q |
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| T |
23701488 |
tcatgatgaagaaatttttcgattatgtgatgagacatatgcagaagaattacaaatacaagaagcattattattttccgctcttatgtcaaatactact |
23701389 |
T |
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| Q |
281 |
atagatgtaaaaaatgaaatccaagtagtggatgcaaaagttgatctcaaacagaagcagaaagaggcttttgtaggtgaatcttcttcgtcg |
373 |
Q |
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| T |
23701388 |
atagatgtaaaatatgaaatccaagaagtggatacaaaagttgatctcaaacagaagcagaagcaggcttttgtaggtgaatattctttgtcg |
23701296 |
T |
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