View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_28 (Length: 361)
Name: NF11826_low_28
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 6753043 - 6752691
Alignment:
| Q |
1 |
aattgcacaatcctcatagcctaggttacaccagaaatttttaactctagcaaactgacagtgcgtctccataagaacaacaagtaaaggtttatatctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6753043 |
aattgcacaatcctcatagcctaggttacaccagaaatttttaactctagaaaactgacagtgcgtctccataagaacaacaagtaaaggtttatatctt |
6752944 |
T |
|
| Q |
101 |
ttaataaggactcgggtttgtctcttaccctccttattaacggcaccccttataattccaactaagaatagataaatcattaaaactagtcataagtacc |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6752943 |
ttaataaggactcgggttcgtctcttaccctccttattaacggcaccccttata-ttccaactaagaatagataaatcattaaaactagtcataagtacc |
6752845 |
T |
|
| Q |
201 |
ttagggaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttaacatttgcactagccttggaaccatcattatttatgtgg |
300 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
6752844 |
ttagtgaaataaaggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttgacatttgcactagccttggaaccatccttatttatgtgg |
6752745 |
T |
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| Q |
301 |
acaccacttgtattattaatttcatgcttattacacatgttggatcctttgctt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6752744 |
acaccacttgtattattaatttcatgcttattacacatgttggatcctttgctt |
6752691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 1811491 - 1811761
Alignment:
| Q |
1 |
aattgcacaatcctcatagcctaggttacaccagaaatttttaactctagcaaactgacagtgcgtctccataagaacaacaagtaaaggtttatatctt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1811491 |
aattgcacaattctcatagcctaggttacaccagaaatttttaactctagaaaactgagagtgcgtctccataagaacaacaagtaaaggtttatatctt |
1811590 |
T |
|
| Q |
101 |
ttaataaggactcgggtttgtctcttaccctccttattaacggcaccccttataattccaactaagaatagataaatcattaaaactagtcataagtacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1811591 |
ttaataaggactcgggtttgtctcttaccctccttattaacggcaccccttat-attccaactaagaatagataaatcattaaaactagtcataagtacc |
1811689 |
T |
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| Q |
201 |
ttagggaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggagttaacatttgcact |
272 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1811690 |
ttagtgaaatataggaatgtagtgcacctcagtctacgtcgtttccatagccatggaattaacatttgcact |
1811761 |
T |
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