View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_3 (Length: 788)
Name: NF11826_low_3
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 573; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 21 - 700
Target Start/End: Complemental strand, 6933129 - 6932450
Alignment:
| Q |
21 |
agtgtctatgtcagtgcttcatatttcagcttcacttcagacataattatacataagtaactacaatcagaatggtggtagagataacctgaaatccagc |
120 |
Q |
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| T |
6933129 |
agtgtatatgtcggtggttcatgtttcagcttcaattcagacataattatacataaataattacgatcagaatggtggcggaaataacctgaaatccagc |
6933030 |
T |
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| Q |
121 |
aatgaaaagagaaccatcatctgaaaactgcgaaacataagcacgacttcccattcgatcgacaatccaaggacctttggtaggcaaatagcggctcgac |
220 |
Q |
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| T |
6933029 |
tataaaaagagaaccatcatctgaaaactgcgaaacataagcacgacttcccatccgatcgacaatccaaggacctttggtaggcaaatagcggctcgac |
6932930 |
T |
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| Q |
221 |
atatgacaccgatcagctgctgaaaatttccctcttccagaaaaattaccttctctgcctaccaacattcttacagttgatgcaggtaatttccccatac |
320 |
Q |
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| T |
6932929 |
atatgacaccgatcagctgctgaaaatttccctcttccagaaaaattaccttctctgcctaccaacattcttacagttgatgcaggtaatttccccatac |
6932830 |
T |
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| Q |
321 |
caggaacaacacgactcaaattctcatgtggacttgacctaagttttgtgatctgtgtaatttcatgaacaagataacttgctccttctccatccattcc |
420 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6932829 |
caggaacaacccgactcaaattctcatgtggacttgacctaagttttgtgatctgtgcaatttcatgaacaagataacttgctccttctccatccattcc |
6932730 |
T |
|
| Q |
421 |
acttccactagattcattactgctaccactaccatcattcatacagttacttgtatctttgttcattgtctctaactctttcaaaatcttacaaaaatgc |
520 |
Q |
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| T |
6932729 |
acttccactagattcattactgctaccactaccatcattcatacagttacttgtatctttgttcattgtctctaactctttcaaaatcctacaaaaatgc |
6932630 |
T |
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| Q |
521 |
atcatatcaaagaaacttagccaaaggaattcttaaatcttaatcataaatacacaaaactatgataaaattctatcattttgaactatcttaaacccaa |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6932629 |
atcatatcaaagaaacttagccaaaggaattcttaaatcttaatcataaatacacaaaactatgataaaattctatcattttgaactatcttaaacccaa |
6932530 |
T |
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| Q |
621 |
atcaccacctaaatctnnnnnnnnnnnnncccttttagcctcacactatgaatataagctatacaaatgaaattaggtgg |
700 |
Q |
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| T |
6932529 |
atcaccacctaaatctaaaaattaaaaaacccttttagcctcacactatgaatataagctatacaaatgaaattaggtgg |
6932450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 748 - 788
Target Start/End: Complemental strand, 6932397 - 6932357
Alignment:
| Q |
748 |
attgatataacaaaagggtcggtaagaaaaatgagaaatcg |
788 |
Q |
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| T |
6932397 |
attgatataacaaaagggtcggtgagaaaaatgagaaatcg |
6932357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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