View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11826_low_30 (Length: 342)

Name: NF11826_low_30
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11826_low_30
NF11826_low_30
[»] chr5 (18 HSPs)
chr5 (90-342)||(41819482-41819734)
chr5 (18-90)||(41819383-41819455)
chr5 (100-205)||(6593180-6593285)
chr5 (112-210)||(5963362-5963460)
chr5 (100-152)||(30291141-30291193)
chr5 (119-222)||(39105363-39105466)
chr5 (100-181)||(42573888-42573969)
chr5 (164-220)||(465898-465954)
chr5 (130-222)||(3566386-3566478)
chr5 (143-222)||(12425494-12425573)
chr5 (172-230)||(7853610-7853668)
chr5 (119-222)||(18637088-18637193)
chr5 (112-181)||(14675009-14675078)
chr5 (185-230)||(37112318-37112363)
chr5 (185-222)||(42582761-42582798)
chr5 (143-219)||(7674571-7674647)
chr5 (134-210)||(11835191-11835267)
chr5 (93-149)||(27104554-27104610)
[»] chr1 (21 HSPs)
chr1 (106-222)||(37841884-37842000)
chr1 (92-218)||(48064181-48064307)
chr1 (115-222)||(38578423-38578529)
chr1 (162-222)||(34619446-34619506)
chr1 (108-207)||(4549754-4549853)
chr1 (166-222)||(836407-836463)
chr1 (119-222)||(9572176-9572279)
chr1 (103-146)||(10199536-10199579)
chr1 (171-222)||(15477529-15477580)
chr1 (119-218)||(27146320-27146419)
chr1 (125-211)||(5894242-5894328)
chr1 (125-211)||(15084795-15084881)
chr1 (184-222)||(24915119-24915157)
chr1 (92-141)||(10082514-10082563)
chr1 (185-222)||(13809963-13810000)
chr1 (185-230)||(38160063-38160108)
chr1 (185-218)||(51190826-51190859)
chr1 (162-222)||(1432457-1432517)
chr1 (129-169)||(1829075-1829115)
chr1 (103-215)||(37593744-37593856)
chr1 (164-232)||(46499912-46499980)
[»] chr4 (15 HSPs)
chr4 (112-223)||(17883960-17884071)
chr4 (94-152)||(50298405-50298463)
chr4 (112-232)||(17751182-17751300)
chr4 (124-221)||(3155507-3155604)
chr4 (169-222)||(28300367-28300420)
chr4 (94-222)||(26883869-26883997)
chr4 (95-222)||(26520297-26520424)
chr4 (113-203)||(2733213-2733303)
chr4 (172-222)||(47946150-47946200)
chr4 (97-222)||(2987066-2987191)
chr4 (115-196)||(42641727-42641808)
chr4 (98-207)||(50662815-50662923)
chr4 (172-220)||(47800582-47800630)
chr4 (185-221)||(52326178-52326214)
chr4 (162-222)||(54392887-54392946)
[»] chr8 (9 HSPs)
chr8 (119-220)||(37444485-37444586)
chr8 (100-222)||(37353317-37353438)
chr8 (90-138)||(44426539-44426587)
chr8 (159-222)||(3537099-3537162)
chr8 (157-222)||(7646143-7646208)
chr8 (98-149)||(2482740-2482791)
chr8 (100-210)||(4558679-4558788)
chr8 (119-217)||(26215395-26215493)
chr8 (115-152)||(41442573-41442610)
[»] chr2 (14 HSPs)
chr2 (101-209)||(39567784-39567892)
chr2 (112-210)||(9833047-9833145)
chr2 (100-149)||(42974233-42974282)
chr2 (94-181)||(15288715-15288802)
chr2 (125-220)||(32364794-32364889)
chr2 (126-220)||(42457854-42457948)
chr2 (100-157)||(41702318-41702375)
chr2 (95-210)||(43570292-43570404)
chr2 (127-219)||(36114594-36114688)
chr2 (187-222)||(43199861-43199896)
chr2 (164-222)||(42907303-42907361)
chr2 (185-222)||(12464541-12464578)
chr2 (164-220)||(19243552-19243609)
chr2 (185-221)||(36114384-36114420)
[»] chr7 (16 HSPs)
chr7 (125-232)||(42656420-42656527)
chr7 (100-232)||(43250737-43250869)
chr7 (93-211)||(40009344-40009461)
chr7 (112-152)||(7612351-7612391)
chr7 (112-152)||(35331036-35331076)
chr7 (162-232)||(3836720-3836788)
chr7 (102-148)||(32156891-32156937)
chr7 (112-170)||(32714314-32714372)
chr7 (161-211)||(43152981-43153031)
chr7 (185-222)||(22283812-22283849)
chr7 (185-222)||(30180016-30180053)
chr7 (185-222)||(34083593-34083630)
chr7 (162-218)||(28613606-28613662)
chr7 (119-183)||(33552928-33552992)
chr7 (162-210)||(36982415-36982463)
chr7 (159-223)||(39539828-39539892)
[»] chr3 (17 HSPs)
chr3 (100-222)||(30573982-30574102)
chr3 (124-222)||(25447312-25447410)
chr3 (98-152)||(5435710-5435764)
chr3 (100-149)||(3776770-3776819)
chr3 (161-222)||(14145853-14145914)
chr3 (115-222)||(2304311-2304416)
chr3 (119-222)||(35127439-35127542)
chr3 (164-231)||(49586975-49587042)
chr3 (124-218)||(40665333-40665427)
chr3 (185-222)||(24684891-24684928)
chr3 (185-222)||(30956694-30956731)
chr3 (185-222)||(30972506-30972543)
chr3 (113-202)||(49465751-49465840)
chr3 (162-210)||(2128331-2128379)
chr3 (162-222)||(32703080-32703140)
chr3 (164-220)||(42808923-42808979)
chr3 (162-222)||(44061091-44061151)
[»] chr6 (9 HSPs)
chr6 (172-230)||(507172-507230)
chr6 (141-222)||(9093624-9093705)
chr6 (110-218)||(8349736-8349843)
chr6 (113-222)||(34611766-34611874)
chr6 (185-221)||(28621179-28621215)
chr6 (162-222)||(31624200-31624260)
chr6 (157-210)||(323748-323801)
chr6 (92-181)||(31686553-31686642)
chr6 (113-149)||(33890675-33890711)
[»] scaffold0024 (1 HSPs)
scaffold0024 (100-210)||(27457-27566)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 90 - 342
Target Start/End: Original strand, 41819482 - 41819734
Alignment:
Q  90 tattaggccatgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagat 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41819482 tattaggccatgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagctatttctataatggaagat 41819581  T
Q  190 aaaataaatttaaattgtttttgtataagctatcttggagagcggccgtgttttggtggtaaaaattgattttgtaatattgattatggccaaaagttga 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41819582 aaaataaatttaaattgtttttgtataagctatcttggagagcgggcgtgttttggtggtaaaaattgattttgtaatattgattatggccaaaagttga 41819681  T
Q  290 ttatggctaaaagtgagttgatggtaaagtggcttatgtgtggacacatttac 342  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  41819682 ttatggctaaaagtgagttaatggtaaagtggcttatgtttggacacatttac 41819734  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 41819383 - 41819455
Alignment:
Q  18 tctttcaattattgatactgattacattatagttttgaaattctgtgttttatctattttttctgtatgttct 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41819383 tctttcaattattgatactgattacattatagttttgaaattctgtgttttatctattttttccgtatgttct 41819455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 205
Target Start/End: Original strand, 6593180 - 6593285
Alignment:
Q  100 tgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatt 199  Q
    ||||||| ||| ||||||||||||||||||||||||||| || ||||| ||||  ||| || ||||||| ||||||||||||   ||||||||||||| |    
T  6593180 tgtttggataaacaacttaatttacagcttatagcataatcatttatcttgatacgcgcttatgtataaacaatttctataacaaaagataaaataaagt 6593279  T
Q  200 taaatt 205  Q
    ||||||    
T  6593280 taaatt 6593285  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 5963460 - 5963362
Alignment:
Q  112 caacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttt 210  Q
    ||||||||||| ||  ||||||||||| || |||||||||| |||| || |||| || | |||||||||||| ||||||||||||| ||||||||||||    
T  5963460 caacttaatttgcaatttatagcataagcatttatcatgataagcgcttatgtacaaactatttctataatgaaagataaaataaagttaaattgtttt 5963362  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 30291141 - 30291193
Alignment:
Q  100 tgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgat 152  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||||||||||||    
T  30291141 tgtttggataaccaacttaatttgcagcttatagcataaacacttatcatgat 30291193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 39105363 - 39105466
Alignment:
Q  119 atttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataag 218  Q
    |||| |||||||||||||||   ||||||||||| |||| || ||||||||| |||||||||    || || |||| || |||||||||||| |||||||    
T  39105363 atttgcagcttatagcataagtgcttatcatgataagcgcttatgtataagctatttctatagctaaatatgaaatgaagttaaattgttttcgtataag 39105462  T
Q  219 ctat 222  Q
    ||||    
T  39105463 ctat 39105466  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 42573969 - 42573888
Alignment:
Q  100 tgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataa 181  Q
    ||||||| ||| || |||||||| ||||||||||| | | | ||||||||||| |||| || ||||||||| ||||||||||    
T  42573969 tgtttggataaacagcttaatttgcagcttatagcctgagcgcttatcatgataagcgcttatgtataagctatttctataa 42573888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 465898 - 465954
Alignment:
Q  164 tataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagct 220  Q
    ||||||| |||||||| |   ||||||||||||| ||||||||||||||||||||||    
T  465898 tataagctatttctatgacaaaagataaaataaagttaaattgtttttgtataagct 465954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 3566478 - 3566386
Alignment:
Q  130 atagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    |||||| |||||||||||||||| |||  ||   ||||||| |||||||||    |||| |||||||| ||||||| ||||||||||||||||    
T  3566478 atagcacaaacacttatcatgataagcacttacctataagctatttctatacccaaagagaaaataaagttaaattatttttgtataagctat 3566386  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 12425494 - 12425573
Alignment:
Q  143 ttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    |||||||||| | || || ||||||| | |||| |||| |  ||||||||||||| |||||||||||| |||||||||||    
T  12425494 ttatcatgataaacgcttatgtataaactatttatatagtaaaagataaaataaagttaaattgttttcgtataagctat 12425573  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 7853610 - 7853668
Alignment:
Q  172 atttctataatggaagataaaataaatttaaattgtttttgtataagctatcttggaga 230  Q
    ||||||||||   ||||||||||||| |||||||||||  |||| ||||||||||||||    
T  7853610 atttctataacaaaagataaaataaagttaaattgtttccgtattagctatcttggaga 7853668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 18637193 - 18637088
Alignment:
Q  119 atttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgttttt--gtata 216  Q
    |||| ||||||||||||||| |||||||  |||| | || || |||||||||  ||||| | ||  ||||||||| ||| |||||||||||||  |||||    
T  18637193 atttgcagcttatagcataagcacttatagtgataaacgattatgtataagctgtttctgtcataaaagataaaacaaaattaaattgttttttcgtata 18637094  T
Q  217 agctat 222  Q
    ||||||    
T  18637093 agctat 18637088  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 14675078 - 14675009
Alignment:
Q  112 caacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataa 181  Q
    ||||||||||| |||||||| ||||||| | |||||||||| || | || |||| |||| ||||||||||    
T  14675078 caacttaatttgcagcttatggcataaatagttatcatgataagtgcttatgtagaagctatttctataa 14675009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 37112363 - 37112318
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagctatcttggaga 230  Q
    ||||||||| ||| ||||||||||||||||||| || |||||||||    
T  37112363 aagataaaacaaagttaaattgtttttgtataacctgtcttggaga 37112318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 42582798 - 42582761
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  42582798 aagataaaataaatttaaattatttttgtatatgctat 42582761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 7674571 - 7674647
Alignment:
Q  143 ttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagc 219  Q
    |||||||||| |||  || | ||||||| |||||||||    ||||||||||||||||||||||||||  |||||||    
T  7674571 ttatcatgataagcacttatatataagctatttctataccaaaagataaaataaatttaaattgttttcttataagc 7674647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 11835191 - 11835267
Alignment:
Q  134 cataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttt 210  Q
    ||||||| ||||||||||| || | || ||||||| | |||| |||||   ||||||||||||| ||||||||||||    
T  11835191 cataaacgcttatcatgataagtgtttatgtataaaccatttttataacaaaagataaaataaagttaaattgtttt 11835267  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 27104610 - 27104554
Alignment:
Q  93 taggccatgtttgggtaagcaacttaatttacagcttatagcataaacacttatcat 149  Q
    |||||| |||||||  || ||||| ||||||  ||||||||||||||||||||||||    
T  27104610 taggccctgtttggaaaaacaactcaatttaacgcttatagcataaacacttatcat 27104554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 37841884 - 37842000
Alignment:
Q  106 ggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaatt 205  Q
    ||||| ||||||||||| ||||| ||||||||| ||||||||||||| ||   |  ||||||||| ||| ||||||   | ||||||||||| |||||||    
T  37841884 ggtaaacaacttaatttgcagctaatagcataagcacttatcatgataagtactcatgtataagctattcctataacaaatgataaaataaagttaaatt 37841983  T
Q  206 gtttttgtataagctat 222  Q
    ||||| |||||||||||    
T  37841984 gttttcgtataagctat 37842000  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 48064181 - 48064307
Alignment:
Q  92 ttaggccatgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataa 191  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||| | ||||||||||| ||   |  |||| || |||||||||||    |||||||    
T  48064181 ttaggccatgtttggataaacaacttaatttgcagcttatagcataagcccttatcatgattagtcctaatgtagaaacaatttctatagcaaaagataa 48064280  T
Q  192 aataaatttaaattgtttttgtataag 218  Q
    |||||| | ||| | ||||||||||||    
T  48064281 aataaagtaaaactatttttgtataag 48064307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 222
Target Start/End: Original strand, 38578423 - 38578529
Alignment:
Q  115 cttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgta 214  Q
    |||||||||||||||||||||||| | ||||||||||| |     || |||||||| ||||||||||   ||||||| ||||| ||||||| ||||||||    
T  38578423 cttaatttacagcttatagcataagcgcttatcatgataataaactt-gtataagctatttctataacaaaagataacataaagttaaattatttttgta 38578521  T
Q  215 taagctat 222  Q
    ||||||||    
T  38578522 taagctat 38578529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 34619506 - 34619446
Alignment:
Q  162 tgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||| ||||||||||   ||||||||||||  ||||||||||||||||||||||||    
T  34619506 tgtataagccatttctataacaaaagataaaataaggttaaattgtttttgtataagctat 34619446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 4549754 - 4549853
Alignment:
Q  108 taagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgt 207  Q
    |||| |||||||||| ||||||||||||||||| |||| || ||| |  | || |||| |||| ||||||||||   ||||||||||||| |||||||||    
T  4549754 taagtaacttaatttgcagcttatagcataaacgcttagcacgataaatgcttatgtacaagctatttctataacaaaagataaaataaagttaaattgt 4549853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 836463 - 836407
Alignment:
Q  166 taagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||| |||| |||| || |||||||||||||  |||||||||||||||||||||||    
T  836463 taagctatttttatagtgaaagataaaataaaactaaattgtttttgtataagctat 836407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 9572279 - 9572176
Alignment:
Q  119 atttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataag 218  Q
    |||| |||||||||||| ||   | ||||||||| |||| |  ||||| ||| |||||||||    ||||||||||||| |||||||| |||||||||||    
T  9572279 atttgcagcttatagcacaagtgcctatcatgatcagcgctaatgtattagctatttctatagcaaaagataaaataaagttaaattgcttttgtataag 9572180  T
Q  219 ctat 222  Q
    ||||    
T  9572179 ctat 9572176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 146
Target Start/End: Complemental strand, 10199579 - 10199536
Alignment:
Q  103 ttgggtaagcaacttaatttacagcttatagcataaacacttat 146  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||    
T  10199579 ttgggtaaacaacttattttgcagcttatagcataaacacttat 10199536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 15477529 - 15477580
Alignment:
Q  171 aatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    |||||||||| |  ||||||||||||| |||||||||||||||||| |||||    
T  15477529 aatttctatagtaaaagataaaataaagttaaattgtttttgtatatgctat 15477580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 27146419 - 27146320
Alignment:
Q  119 atttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataag 218  Q
    |||| |||||||||||||||  || ||||||||| |||| || ||||||||  ||||||| |    |||||||||||||||||||||  ||| |||||||    
T  27146419 atttgcagcttatagcataagtacatatcatgataagcgtttatgtataaggtatttctacagcaaaagataaaataaatttaaattagtttcgtataag 27146320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 211
Target Start/End: Complemental strand, 5894328 - 5894242
Alignment:
Q  125 agcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgttttt 211  Q
    ||||||||||| ||   ||||||||||| |||| || ||||||||| ||||||||  ||| |||||||||||| |||| || |||||    
T  5894328 agcttatagcacaagtgcttatcatgataagcgcttatgtataagctatttctatggtggcagataaaataaagttaattttttttt 5894242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 15084795 - 15084881
Alignment:
Q  125 agcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgttttt 211  Q
    |||||||||||||||||||||| |||||   ||||||||||||||   ||||| ||||  ||||||||  ||| || ||||||||||    
T  15084795 agcttatagcataaacacttataatgatacacggttttgtataagttgtttctgtaataaaagataaatcaaaattgaattgttttt 15084881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 24915157 - 24915119
Alignment:
Q  184 gaagataaaataaatttaaattgtttttgtataagctat 222  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  24915157 gaagataaaataaagttaaattgtttttgtatatgctat 24915119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 10082563 - 10082514
Alignment:
Q  92 ttaggccatgtttgggtaagcaacttaatttacagcttatagcataaaca 141  Q
    |||| |||||||||| ||| |||||||| || ||||||||||||||||||    
T  10082563 ttagtccatgtttggataaacaacttaaatttcagcttatagcataaaca 10082514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 13809963 - 13810000
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  13809963 aagataaaataaagttaaattgtttttgtatatgctat 13810000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 38160108 - 38160063
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagctatcttggaga 230  Q
    |||||||| |||| || ||||||||| |||||||||||||||||||    
T  38160108 aagataaactaaagttcaattgttttcgtataagctatcttggaga 38160063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 51190826 - 51190859
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataag 218  Q
    ||||||||||||| ||||||||||||||||||||    
T  51190826 aagataaaataaagttaaattgtttttgtataag 51190859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 1432457 - 1432517
Alignment:
Q  162 tgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||| ||||||||| |  ||||||||||| | || |||||||||| ||||||||||    
T  1432457 tgtataagctatttctatagtaaaagataaaatagagttcaattgtttttttataagctat 1432517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 1829115 - 1829075
Alignment:
Q  129 tatagcataaacacttatcatgatgagcggttttgtataag 169  Q
    |||||||||||||||||||||||| |||| || ||||||||    
T  1829115 tatagcataaacacttatcatgataagcgcttatgtataag 1829075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 215
Target Start/End: Complemental strand, 37593856 - 37593744
Alignment:
Q  103 ttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaa 202  Q
    |||| ||| ||||||||||| ||||||| |||| || | ||||||| ||| || | || ||||||||  ||||||||||   ||||||||||||  |||     
T  37593856 ttggataaacaacttaatttgcagcttaaagcaaaagcgcttatcacgataagtgtttatgtataaggtatttctataacacaagataaaataatgttag 37593757  T
Q  203 attgtttttgtat 215  Q
    |||||||| ||||    
T  37593756 attgttttcgtat 37593744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 46499980 - 46499912
Alignment:
Q  164 tataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctatcttggagagc 232  Q
    ||||||| ||||||||||   ||||||||||||| | ||||||||||| | |||||| || ||||||||    
T  46499980 tataagctatttctataagaaaagataaaataaagtcaaattgtttttatttaagctttcatggagagc 46499912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 223
Target Start/End: Original strand, 17883960 - 17884071
Alignment:
Q  112 caacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgttttt 211  Q
    |||||||||||  ||||||||||||||  |||||||||| | || | |  ||| ||||| ||||||||||   ||||||||||||| |||||||||||||    
T  17883960 caacttaatttttagcttatagcataaggacttatcatggtaagtgctcatgtgtaagctatttctataacaaaagataaaataaagttaaattgttttt 17884059  T
Q  212 gtataagctatc 223  Q
    ||||||| ||||    
T  17884060 gtataagttatc 17884071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 50298405 - 50298463
Alignment:
Q  94 aggccatgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgat 152  Q
    ||||||||||||| ||| |||||||||||  ||||||||||||||||||||||||||||    
T  50298405 aggccatgtttggataaacaacttaatttgaagcttatagcataaacacttatcatgat 50298463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 17751300 - 17751182
Alignment:
Q  112 caacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgttttt 211  Q
    |||||||| || ||||||||||||||| ||||| | ||||| |||| || | ||||||| |||||||||||  |||| ||||| || ||| |||||||      
T  17751300 caacttaaattgcagcttatagcataagcacttgtaatgataagcgcttatttataagctatttctataataaaaga-aaaat-aagttagattgtttac 17751203  T
Q  212 gtataagctatcttggagagc 232  Q
    ||||||||||||||| |||||    
T  17751202 gtataagctatcttgcagagc 17751182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 3155507 - 3155604
Alignment:
Q  124 cagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagcta 221  Q
    |||||||||| | || | ||||||||||| |||   | ||||||||| |||||||||    ||||||||||||| |||||||||||||||| ||||||    
T  3155507 cagcttatagtacaagcgcttatcatgataagcatgtatgtataagctatttctatagcaaaagataaaataaagttaaattgtttttgtacaagcta 3155604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 28300420 - 28300367
Alignment:
Q  169 gcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    |||| |||||||||  |||| |||||||| ||||||||||||||||||||||||    
T  28300420 gcaagttctataatcaaagaaaaaataaagttaaattgtttttgtataagctat 28300367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 26883869 - 26883997
Alignment:
Q  94 aggccatgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaa 193  Q
    |||| |||||||  ||| ||||||||||| |||| |||||||||| | |||||| |||| || | || ||||||||  |||||| |||    ||||||||    
T  26883869 aggctatgtttgtataaacaacttaatttgcagcatatagcataagcgcttatcttgataagtgattatgtataagttatttctctaagaagagataaaa 26883968  T
Q  194 taaatttaaattgtttttgtataagctat 222  Q
    | || ||||||||||||  ||||||||||    
T  26883969 tgaagttaaattgttttcatataagctat 26883997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 222
Target Start/End: Complemental strand, 26520424 - 26520297
Alignment:
Q  95 ggccatgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaat 194  Q
    |||| ||||||| ||| ||||||||||| | |||| ||||||||    |||||||||| |||  || ||||||| |  |||||||||   ||||| ||||    
T  26520424 ggccctgtttggataaacaacttaatttgctgcttctagcataagtgtttatcatgataagcacttatgtataaactgtttctataacaaaagatgaaat 26520325  T
Q  195 aaatttaaattgtttttgtataagctat 222  Q
    ||| |||||||||||| || ||||||||    
T  26520324 aaagttaaattgttttcgtgtaagctat 26520297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 2733213 - 2733303
Alignment:
Q  113 aacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaa 203  Q
    |||||||| | ||||||||||||||| ||||| |||||||  ||  || |||||||||||||| ||| |   ||||||||||||| |||||    
T  2733213 aacttaatatgcagcttatagcataagcacttgtcatgatatgcacttatgtataagcaatttttatgaaaaaagataaaataaagttaaa 2733303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 47946150 - 47946200
Alignment:
Q  172 atttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    |||||||||| | |||||||||| || |||||||||||| |||||||||||    
T  47946150 atttctataacgtaagataaaatgaagttaaattgttttcgtataagctat 47946200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 2987066 - 2987191
Alignment:
Q  97 ccatgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataa 196  Q
    |||||||||| ||| ||| ||||||| ||||||||| |||||    |||||||||| |||  || | ||||||| ||||||| ||   || |||||||||    
T  2987066 ccatgtttggataaacaagttaatttgcagcttataacataagtgtttatcatgataagcacttatttataagctatttctacaacaaaaaataaaataa 2987165  T
Q  197 atttaaattgtttttgtataagctat 222  Q
    | ||||  ||||| ||||||||||||    
T  2987166 agttaagatgtttatgtataagctat 2987191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 42641808 - 42641727
Alignment:
Q  115 cttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataa 196  Q
    |||||||| ||||||||  ||||| ||||||||||||| || | || ||||||||| ||||| ||||   ||||||||||||    
T  42641808 cttaatttgcagcttattacataagcacttatcatgataagtgtttatgtataagctatttccataacaaaagataaaataa 42641727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 50662923 - 50662815
Alignment:
Q  98 catgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaa 197  Q
    ||||||||| ||| ||||||| ||| ||||||||| || ||   |||||||||||||||| || ||||||||| |||| ||||    ||||||||||||     
T  50662923 catgtttggataaacaactta-tttgcagcttatatcacaagagcttatcatgatgagcgtttatgtataagctatttttatagcataagataaaataat 50662825  T
Q  198 tttaaattgt 207  Q
     |||||||||    
T  50662824 gttaaattgt 50662815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 47800582 - 47800630
Alignment:
Q  172 atttctataatggaagataaaataaatttaaattgtttttgtataagct 220  Q
    ||||||||||   ||||||||||||| ||||| ||||||||||||||||    
T  47800582 atttctataacaaaagataaaataaagttaaaatgtttttgtataagct 47800630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 52326214 - 52326178
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagcta 221  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  52326214 aagataaaataaagttaaattgttgttgtataagcta 52326178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 54392946 - 54392887
Alignment:
Q  162 tgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||| |||||||||||  || ||||| |||| |||||||||||||||||| |||||    
T  54392946 tgtataagctatttctataataaaaaataaa-taaagttaaattgtttttgtatatgctat 54392887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 37444586 - 37444485
Alignment:
Q  119 atttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataag 218  Q
    |||| ||| ||| ||||||| ||||||||||||| |||| || ||||||||| ||| ||||||   |||||||| |||| |||||||||||| |||||||    
T  37444586 atttgcaggttaaagcataagcacttatcatgataagcgcttatgtataagctattactataacaaaagataaagtaaagttaaattgttttcgtataag 37444487  T
Q  219 ct 220  Q
    ||    
T  37444486 ct 37444485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 37353438 - 37353317
Alignment:
Q  100 tgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatt 199  Q
    ||||||| ||| |||||| |||| ||||||||||||||||  ||||| ||||| |||| || |||| || | ||||||||||   ||||| ||||||| |    
T  37353438 tgtttggataaacaacttgatttgcagcttatagcataaatgcttatgatgataagcgcttatgtacaaactatttctataacaaaagat-aaataaagt 37353340  T
Q  200 taaattgtttttgtataagctat 222  Q
    |||||||||||||| || |||||    
T  37353339 taaattgtttttgtgtatgctat 37353317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 44426587 - 44426539
Alignment:
Q  90 tattaggccatgtttgggtaagcaacttaatttacagcttatagcataa 138  Q
    ||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  44426587 tattaggtcatgtttgggtaaacaacttaatttgcagcttatagcataa 44426539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 3537162 - 3537099
Alignment:
Q  159 ttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||||||||||||||||    ||||||||||||| | |||||||||| |||||||||||    
T  3537162 ttttgtataagcaatttctatagcaaaagataaaataaagtcaaattgttttcgtataagctat 3537099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 7646143 - 7646208
Alignment:
Q  157 ggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    |||| ||||||||| ||||||||||   ||| ||||||||| ||||||||||||||||||| ||||    
T  7646143 ggttatgtataagctatttctataagaaaaggtaaaataaagttaaattgtttttgtataatctat 7646208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 2482740 - 2482791
Alignment:
Q  98 catgtttgggtaagcaacttaatttacagcttatagcataaacacttatcat 149  Q
    ||||||||| ||| || ||||||||  |||||||||||||||||||||||||    
T  2482740 catgtttggataaacagcttaatttgaagcttatagcataaacacttatcat 2482791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 210
Target Start/End: Original strand, 4558679 - 4558788
Alignment:
Q  100 tgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatt 199  Q
    ||||||| ||| ||||||||||    |||||||||||||||  |||| ||| | || | || ||||||||| |||||||||||  ||||||||||||| |    
T  4558679 tgtttggataaacaacttaattacgcgcttatagcataaacgtttattatg-taagtgtttatgtataagctatttctataataaaagataaaataaagt 4558777  T
Q  200 taaattgtttt 210  Q
    |||||| ||||    
T  4558778 taaattatttt 4558788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 26215395 - 26215493
Alignment:
Q  119 atttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataa 217  Q
    |||| ||||||||||||  | | ||||| ||||| |||| || ||||||||| ||||||||||   ||||||||||||| ||||| | |||| ||||||    
T  26215395 attttcagcttatagcacgagcgcttataatgataagcgcttatgtataagctatttctataacaaaagataaaataaagttaaactattttcgtataa 26215493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 41442610 - 41442573
Alignment:
Q  115 cttaatttacagcttatagcataaacacttatcatgat 152  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  41442610 cttaatttttagcttatagcataaacacttatcatgat 41442573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 209
Target Start/End: Original strand, 39567784 - 39567892
Alignment:
Q  101 gtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaattt 200  Q
    |||||| ||| || ||||||| ||||||||| |||||| | ||||||||||| |||  || ||||||||  ||||||||||   ||||||||||||| ||    
T  39567784 gtttggataaacagcttaattcacagcttattgcataagcgcttatcatgataagcacttgtgtataagatatttctataacaaaagataaaataaagtt 39567883  T
Q  201 aaattgttt 209  Q
    |||||||||    
T  39567884 aaattgttt 39567892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 9833047 - 9833145
Alignment:
Q  112 caacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttt 210  Q
    ||||||||||||||||||||||||||| || |||||||||| | |  || ||||||| | ||||| ||||   |||||||||||||| |||||| ||||    
T  9833047 caacttaatttacagcttatagcataagcatttatcatgataaacacttatgtataatctatttccataacaaaagataaaataaatgtaaattttttt 9833145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 42974233 - 42974282
Alignment:
Q  100 tgtttgggtaagcaacttaatttacagcttatagcataaacacttatcat 149  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||||||    
T  42974233 tgtttggataagcaacttaattaagagcttatagcataaacacttatcat 42974282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 15288802 - 15288715
Alignment:
Q  94 aggccatgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataa 181  Q
    ||||| ||||||| | | || ||||||||| |||||||||||||||| || |||| ||| |||| || ||||||||| ||||||||||    
T  15288802 aggccctgtttggattaacagcttaatttatagcttatagcataaactctcatcaagataagcgcttatgtataagctatttctataa 15288715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 32364889 - 32364794
Alignment:
Q  125 agcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagct 220  Q
    |||||||||||| |  |||||||||||| |||  || ||||||||| ||||||||||    |||||||||||  |||||||||||| |||||||||    
T  32364889 agcttatagcatgagaacttatcatgataagcacttatgtataagctatttctataacttcagataaaataacattaaattgttttcgtataagct 32364794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 42457854 - 42457948
Alignment:
Q  126 gcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagct 220  Q
    |||||||||| || | | ||||||||| |||  || ||||||| | ||||||||| |  ||||||||||||| ||||||||||||||| ||||||    
T  42457854 gcttatagcacaagcgcctatcatgataagcatttatgtataatctatttctatagtaaaagataaaataaagttaaattgtttttgtttaagct 42457948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 41702375 - 41702318
Alignment:
Q  100 tgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcg 157  Q
    ||||||| ||| || |||||||| |||||||||||| |||||||||||||||| ||||    
T  41702375 tgtttggataaacagcttaattttcagcttatagcaaaaacacttatcatgataagcg 41702318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 43570292 - 43570404
Alignment:
Q  95 ggccatgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaat 194  Q
    |||| ||||||||||| || |||| ||| |||||||||||| || ||||||||||||| ||||   |||||||||| | ||||||| |  || |||||||    
T  43570292 ggccgtgtttgggtaaacagctta-tttgcagcttatagcacaagcacttatcatgataagcg--cttgtataagctaattctatagtaaaatataaaat 43570388  T
Q  195 aaatttaaattgtttt 210  Q
     || ||||||||||||    
T  43570389 gaagttaaattgtttt 43570404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 36114688 - 36114594
Alignment:
Q  127 cttatagcataaacact--tatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagc 219  Q
    |||||||||||| ||||  ||||||||| || | || || |||| | | ||||||||   ||||||||||||| |||||||||||||||||||||    
T  36114688 cttatagcataagcactcatatcatgataagtgcttatgcataacctagttctataacaaaagataaaataaagttaaattgtttttgtataagc 36114594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 222
Target Start/End: Complemental strand, 43199896 - 43199861
Alignment:
Q  187 gataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43199896 gataaaataaagttaaattgtttttgtataagctat 43199861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 42907303 - 42907361
Alignment:
Q  164 tataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||| ||||||||||  ||||| |||||||| |||||||||||| || ||||||||    
T  42907303 tataagctatttctataacagaagaaaaaataaagttaaattgttttcgtttaagctat 42907361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 12464578 - 12464541
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  12464578 aagataaaataaagttaaattgtttttgtatatgctat 12464541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 19243552 - 19243609
Alignment:
Q  164 tataagcaatttctataatggaa-gataaaataaatttaaattgtttttgtataagct 220  Q
    |||||||  ||||||||||| || ||||||||||||||||||||||||  ||||||||    
T  19243552 tataagctttttctataatgaaaagataaaataaatttaaattgttttgatataagct 19243609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 36114384 - 36114420
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagcta 221  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  36114384 aagataaaataaagttaaattgtttttgtattagcta 36114420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 232
Target Start/End: Original strand, 42656420 - 42656527
Alignment:
Q  125 agcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctatct 224  Q
    |||||||||||||| | |||||||  || |||  || | ||||||| ||||||||||   ||||||||||||| | ||||  ||||||||||||||||||    
T  42656420 agcttatagcataagcgcttatcaaaataagcacttatatataagctatttctataacaaaagataaaataaagtcaaatcatttttgtataagctatct 42656519  T
Q  225 tggagagc 232  Q
    ||||||||    
T  42656520 tggagagc 42656527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 43250869 - 43250737
Alignment:
Q  100 tgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatt 199  Q
    ||||||| ||| |||||| |||| ||||| ||||| ||| |||||| |||||| |||  || ||||||||| || |||| ||   ||||||||||||| |    
T  43250869 tgtttggataaacaactttatttgcagctgatagcttaagcacttaccatgataagcctttatgtataagctatgtctagaacaaaagataaaataaagt 43250770  T
Q  200 taaattgttttt-gtataagctatcttggagagc 232  Q
    ||| |||||||| ||||||||||| |||||||||    
T  43250769 taa-ttgtttttcgtataagctattttggagagc 43250737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 40009344 - 40009461
Alignment:
Q  93 taggccatgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaa 192  Q
    |||||| ||||||  ||| ||||||||||| ||||||| | |||||  |||||||||||| |||| || |||||||||  ||| |||||   |||| |||    
T  40009344 taggccctgtttgaataaacaacttaattttcagcttaca-cataagtacttatcatgattagcgcttatgtataagctgtttttataacaaaagacaaa 40009442  T
Q  193 ataaatttaaattgttttt 211  Q
    ||||| |||||||||||||    
T  40009443 ataaagttaaattgttttt 40009461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 7612351 - 7612391
Alignment:
Q  112 caacttaatttacagcttatagcataaacacttatcatgat 152  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  7612351 caacttaatttgcagcttatagcataagcacttatcatgat 7612391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 35331036 - 35331076
Alignment:
Q  112 caacttaatttacagcttatagcataaacacttatcatgat 152  Q
    ||||||||||||||||||||||||||| |||||| ||||||    
T  35331036 caacttaatttacagcttatagcataagcacttaacatgat 35331076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 3836788 - 3836720
Alignment:
Q  162 tgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctatcttggagagc 232  Q
    ||||||||| ||||||||||   |||||||||| || ||||||  |||| |||||||||||||||||||||    
T  3836788 tgtataagctatttctataac--aagataaaatcaagttaaatgattttcgtataagctatcttggagagc 3836720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 32156891 - 32156937
Alignment:
Q  102 tttgggtaagcaacttaatttacagcttatagcataaacacttatca 148  Q
    ||||| ||| ||||||||||| ||||||||||||||||| |||||||    
T  32156891 tttggataaacaacttaatttgcagcttatagcataaacgcttatca 32156937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 32714314 - 32714372
Alignment:
Q  112 caacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagc 170  Q
    |||||||||||||| ||||||  ||||||| |||||||||| |||| || |||||||||    
T  32714314 caacttaatttacaacttataatataaacatttatcatgataagcgcttatgtataagc 32714372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 43153031 - 43152981
Alignment:
Q  161 ttgtataagcaatttctataatggaagataaaataaatttaaattgttttt 211  Q
    |||||||||| ||||||||||   ||||||||||||| |||||||||||||    
T  43153031 ttgtataagctatttctataacaaaagataaaataaagttaaattgttttt 43152981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 22283849 - 22283812
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  22283849 aagataaaataaagttaaattgtttttgtatcagctat 22283812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 30180016 - 30180053
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  30180016 aagataaaataaagttaaattgttttcgtataagctat 30180053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 34083630 - 34083593
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  34083630 aagataaaataaagttaaattgtttgtgtataagctat 34083593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 28613662 - 28613606
Alignment:
Q  162 tgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataag 218  Q
    ||||||||| |||| |||||   ||||||||| ||| ||||||||||||||||||||    
T  28613662 tgtataagctatttttataacaaaagataaaacaaagttaaattgtttttgtataag 28613606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 33552992 - 33552928
Alignment:
Q  119 atttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatg 183  Q
    |||| |||||||| ||| || |||||| |||||| |||| || ||||||||| ||||||||||||    
T  33552992 atttgcagcttattgcacaagcacttaccatgataagcgcttatgtataagctatttctataatg 33552928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 36982415 - 36982463
Alignment:
Q  162 tgtataagcaatttctataatggaagataaaataaatttaaattgtttt 210  Q
    ||||||||||||||||||| || |||||||||| || ||||||| ||||    
T  36982415 tgtataagcaatttctatattgaaagataaaatgaagttaaattatttt 36982463  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 39539892 - 39539828
Alignment:
Q  159 ttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctatc 223  Q
    |||||||||||| ||||| |||||  |||  |||||||||| ||||||||||  |||||||||||    
T  39539892 ttttgtataagctatttcgataataaaagtgaaaataaattcaaattgttttcatataagctatc 39539828  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 30574102 - 30573982
Alignment:
Q  100 tgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatt 199  Q
    ||||||| ||| || | |||||| ||||||||| ||||| || |||||||||| |||| || ||||||||| ||||||||||   ||||||||||||| |    
T  30574102 tgtttggataaacaccataatttgcagcttatatcataagcatttatcatgataagcgcttatgtataagctatttctataaa--aagataaaataaagt 30574005  T
Q  200 taaattgtttttgtataagctat 222  Q
    ||| || ||||| ||||| ||||    
T  30574004 taagttttttttttataatctat 30573982  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 25447410 - 25447312
Alignment:
Q  124 cagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||| || || | ||||||||||  |||  |||||| ||| | ||||||||| |  ||||||||||||| ||||||||||||||||||||||||    
T  25447410 cagcttataacacaagcgcttatcatgagaagcacttttgtgtaaactatttctatagtaaaagataaaataaacttaaattgtttttgtataagctat 25447312  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 5435710 - 5435764
Alignment:
Q  98 catgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgat 152  Q
    ||||||||| || ||||||||||||||||||||||||||||   |||||||||||    
T  5435710 catgtttggataggcaacttaatttacagcttatagcataagtgcttatcatgat 5435764  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 3776819 - 3776770
Alignment:
Q  100 tgtttgggtaagcaacttaatttacagcttatagcataaacacttatcat 149  Q
    ||||||| ||| ||||||||||||| |||||||| |||||||||||||||    
T  3776819 tgtttggataaacaacttaatttactgcttatagtataaacacttatcat 3776770  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 14145853 - 14145914
Alignment:
Q  161 ttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    |||||||||||| || |||||  |||||||||||||| |||||||||||| ||||| |||||    
T  14145853 ttgtataagcaagttttataacagaagataaaataaagttaaattgttttcgtatatgctat 14145914  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 2304416 - 2304311
Alignment:
Q  115 cttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgta 214  Q
    ||||||||||| |||||| || || || | |||||||| || | || ||||||||| |||||||||||  ||||||||||  |  |||||||||| ||||    
T  2304416 cttaatttacaacttataacacaagcattcatcatgataagtgattatgtataagctatttctataataaaagataaaat--agctaaattgtttgtgta 2304319  T
Q  215 taagctat 222  Q
    ||||||||    
T  2304318 taagctat 2304311  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 35127542 - 35127439
Alignment:
Q  119 atttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataag 218  Q
    |||| ||||||||| ||||| | ||||||||||| || | || |||||| || ||||||||||   |||||| | |||| |||||||||||||| ||| |    
T  35127542 atttgcagcttataccataagctcttatcatgataagtgcttatgtataggctatttctataacaaaagatatactaaagttaaattgtttttgcatatg 35127443  T
Q  219 ctat 222  Q
    ||||    
T  35127442 ctat 35127439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 49587042 - 49586975
Alignment:
Q  164 tataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctatcttggagag 231  Q
    ||||||| ||||||||||   ||||||||||||| | ||| ||||||  |||||||||||||||||||    
T  49587042 tataagctatttctataacaaaagataaaataaagtcaaactgttttcatataagctatcttggagag 49586975  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 40665333 - 40665427
Alignment:
Q  124 cagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataag 218  Q
    |||||||||||||||   ||||||||||| |||  || |||| |||| |||| |||||| ||||||||| |||| | ||||| ||||||| ||||    
T  40665333 cagcttatagcataagttcttatcatgataagcacttctgtacaagctatttttataatagaagataaactaaaataaaattatttttgtgtaag 40665427  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 24684928 - 24684891
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagctat 222  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  24684928 aagataaaataaattttaattgtttttgtatatgctat 24684891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 30956731 - 30956694
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  30956731 aagataaaataaagttaaattgtttttgtataggctat 30956694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 30972543 - 30972506
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  30972543 aagataaaataaagttaaattgtttttgtataggctat 30972506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 49465840 - 49465751
Alignment:
Q  113 aacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaa 202  Q
    |||||||||| ||| ||||||||||| ||||||||||||  | || || ||| ||||| |||| |||||   ||||||||||||| ||||    
T  49465840 aacttaatttgcagtttatagcataatcacttatcatgagaaacgcttatgtgtaagctatttttataacaaaagataaaataaagttaa 49465751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 2128379 - 2128331
Alignment:
Q  162 tgtataagcaatttctataatggaagataaaataaatttaaattgtttt 210  Q
    ||||||||| ||||||||||   ||||||||||||| ||||||||||||    
T  2128379 tgtataagctatttctataacaaaagataaaataaagttaaattgtttt 2128331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 32703080 - 32703140
Alignment:
Q  162 tgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||| |||||||| ||  ||||||||||||| | ||||||||||  ||||||||||    
T  32703080 tgtataagctatttctattataaaagataaaataaactcaaattgttttcatataagctat 32703140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 42808923 - 42808979
Alignment:
Q  164 tataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagct 220  Q
    |||||||  |||||||||   ||||||||||||| ||||||||||||| ||||||||    
T  42808923 tataagctgtttctataacaaaagataaaataaagttaaattgtttttatataagct 42808979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 44061151 - 44061091
Alignment:
Q  162 tgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||| |||||||||    ||||||||||||  ||||||||||||| ||||||||||    
T  44061151 tgtataagctatttctatagcaaaagataaaataaggttaaattgtttttctataagctat 44061091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 507172 - 507230
Alignment:
Q  172 atttctataatggaagataaaataaatttaaattgtttttgtataagctatcttggaga 230  Q
    ||||||||||   ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  507172 atttctataacaaaagataaaataaagttagattgtttttgtataagctatcttggaga 507230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 222
Target Start/End: Complemental strand, 9093705 - 9093624
Alignment:
Q  141 acttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    |||||||||||| |||| || || |||||| |||||||||    ||||||||||||| |||||||||||| |||||||||||    
T  9093705 acttatcatgataagcgcttatggataagctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctat 9093624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 8349843 - 8349736
Alignment:
Q  110 agcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgttt 209  Q
    |||||||||||| |  ||||||||||||| |||||||||| || || | || ||||||| | |||||| |||   ||||||||||||| |||||||||||    
T  8349843 agcaacttaattaagcgcttatagcataaccacttatcat-ataagtgtttgtgtataaactatttctctaacaaaagataaaataaagttaaattgttt 8349745  T
Q  210 ttgtataag 218  Q
    || ||||||    
T  8349744 ttatataag 8349736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 34611766 - 34611874
Alignment:
Q  113 aacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttttg 212  Q
    |||||||||||||||||||||||||| | ||||| ||  | |||  || |  |||| | |||||||| ||| ||||||||||||| ||||||||||||      
T  34611766 aacttaatttacagcttatagcataagcgcttat-attttaagctcttattaataaactatttctattatgcaagataaaataaagttaaattgttttct 34611864  T
Q  213 tataagctat 222  Q
    ||||||||||    
T  34611865 tataagctat 34611874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 28621215 - 28621179
Alignment:
Q  185 aagataaaataaatttaaattgtttttgtataagcta 221  Q
    ||||||||||||| |||||||||||||||||||||||    
T  28621215 aagataaaataaagttaaattgtttttgtataagcta 28621179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 31624200 - 31624260
Alignment:
Q  162 tgtataagcaatttctataatggaagataaaataaatttaaattgtttttgtataagctat 222  Q
    ||||||||| ||||||||||   |||||||||||| ||||||||||||| |||||| ||||    
T  31624200 tgtataagctatttctataacaaaagataaaataagtttaaattgttttcgtataatctat 31624260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 323748 - 323801
Alignment:
Q  157 ggttttgtataagcaatttctataatggaagataaaataaatttaaattgtttt 210  Q
    |||||||||||||| ||||||||| |  ||||||||||||||| ||| ||||||    
T  323748 ggttttgtataagctatttctatattaaaagataaaataaattcaaactgtttt 323801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 31686642 - 31686553
Alignment:
Q  92 ttaggccatgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataa 181  Q
    ||||||||||||| | ||| ||||||||||| |||| || ||||||| | |||||| |||| || | || ||||||||| ||||| ||||    
T  31686642 ttaggccatgtttagataatcaacttaatttgcagcatacagcataagcgcttatcgtgataagtgcttatgtataagctatttcgataa 31686553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 33890675 - 33890711
Alignment:
Q  113 aacttaatttacagcttatagcataaacacttatcat 149  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  33890675 aacttattttgcagcttatagcataaacacttatcat 33890711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 210
Target Start/End: Original strand, 27457 - 27566
Alignment:
Q  100 tgtttgggtaagcaacttaatttacagcttatagcataaacacttatcatgatgagcggttttgtataagcaatttctataatggaagataaaataaatt 199  Q
    ||||||| ||| |||||||| | |  ||||||||||||| | ||||||||| | || | || ||||||||  ||||||||||  |||||||||||||| |    
T  27457 tgtttggataaacaacttaaataaacgcttatagcataagctcttatcatg-taagtgcttatgtataagttatttctataacagaagataaaataaagt 27555  T
Q  200 taaattgtttt 210  Q
     ||||||||||    
T  27556 caaattgtttt 27566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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