View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11826_low_35 (Length: 324)
Name: NF11826_low_35
Description: NF11826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11826_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 7340826 - 7341123
Alignment:
| Q |
17 |
agtaacatcaagaatgtcatcaacaacttgaaacaataatccaatatacctagcaaatttccttaatttttcaatttcatcttcagtgccaccaccaact |
116 |
Q |
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| T |
7340826 |
agtaacatcaagaatgtcatcaacaacttgaaacaataatccaatatacctagcaaatttccttaatttttcaatttcatcttcagtgccaccaccaact |
7340925 |
T |
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| Q |
117 |
attgctcccataacaaccgcggcttctaataaagccgcggttttacgaagatgaataaactctagtgtctctaattccacgtttgattttccttctgatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7340926 |
attgctcccataacaaccgcggcttctaataaagccgcggttttacgaagatgaataaactctagtgtctctaatcccacgtttgattttccttctgatt |
7341025 |
T |
|
| Q |
217 |
ccaaatcaacaatttgtccagcaactagtccttcttttccaacagcttttgccagctcagcaattgctctaacaattctttcaggtgggacccctatg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7341026 |
ccaaatcaacaatttgtccagcaactagtccttcttttccaacagcttttgccagctcagcaattgctctaacaattctttcaggtgggacccctatg |
7341123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 33276898 - 33276855
Alignment:
| Q |
21 |
acatcaagaatgtcatcaacaacttgaaacaataatccaatata |
64 |
Q |
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||||||||||| ||||||||||| ||||||||||| |||||||| |
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| T |
33276898 |
acatcaagaatatcatcaacaacctgaaacaataaaccaatata |
33276855 |
T |
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